Search Results for "coding"
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Showing 16 open source projects for "coding"
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MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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Catch Bugs Before Your Customers DoMove from alert to fix before users notice. AppSignal monitors errors, performance bottlenecks, host health, and uptime—all from one dashboard. Instant notifications on deployments, anomaly triggers for memory spikes or error surges, and seamless log management. Works out of the box with Rails, Django, Express, Phoenix, Next.js, and dozens more. Starts at $23/month with no hidden fees.
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Orange Data Mining
Orange: Interactive data analysis
...Interactive data exploration for rapid qualitative analysis with clean visualizations. Graphic user interface allows you to focus on exploratory data analysis instead of coding, while clever defaults make fast prototyping of a data analysis workflow extremely easy. Place widgets on the canvas, connect them, load your datasets and harvest the insight! When teaching data mining, we like to illustrate rather than only explain. -
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LabPlot
Data Visualization and Analysis
LabPlot is a FREE, open source and cross-platform Data Visualization and Analysis software accessible to everyone. -
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CPAT
RNA coding potential assessment tool
Using RNA-seq, tens of thousands of novel transcripts and isoforms have been identified (Djebali, et al Nature, 2012 , Carbili et al, Gene & Development, 2011) The discovery of these hidden transcriptome rejuvenate the need of distinguishing coding and noncoding RNA. However, Most previous coding potential prediction methods heavily rely on alignment, either pairwise alignment to search for protein evidence or multiple alignments to calculate phylogenetic conservation score (such as CPC , PhyloCSF and RNACode ). This is because most previously identified transcripts including protein coding RNA and short, housekeeping/regulatory RNAs such as snRNAs, snoRNA and tRNA are highly conserved. ... -
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GrainSizeTools script
A Python script for estimating the grain size from thin sections
...The script requires as the input the areas of the grain profiles measured grain-by-grain on planar sections and does not require previous experience with Python programming language (see documentation below and FAQ). For users with coding skills, the script is organized in a modular way facilitating the reuse and code extension. Lopez-Sanchez, MA (2018). GrainSizeTools: a Python script for grain size analysis and paleopiezometry based on grain size. Journal of Open Source Software, 3(30), 863, https://doi.org/10.21105/joss.00863 -
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MLPACK is a C++ machine learning library with emphasis on scalability, speed, and ease-of-use. Its aim is to make machine learning possible for novice users by means of a simple, consistent API, while simultaneously exploiting C++ language features to provide maximum performance and flexibility for expert users. * More info + downloads: https://mlpack.org * Git repo: https://github.com/mlpack/mlpack
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MutaNET
NGS Pipeline and Automated Mutation Analysis
MutaNET comes with a next generation sequencing (NGS) pipeline that calls mutations based on paired-end NGS reads, an automated mutation analysis tool and various file converters and mergers. The mutation analysis feature considers the coding region, protein domains, regulation and transcription factor binding site information, and can be used to analyse the potential impact of mutations on antibiotic resistance. -
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C++QED
A framework for simulating open quantum dynamics
...The principal concept of the design of C++QEDv2 is that all information available at compile time should be processed as such, with the help of TMP. The framework is very sensitive to performance both in computer resources and coding/design. -
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Application to optimize DNA sequences coding protein to put in in the different organizm (f.e. human protein in E.Coli). It proposes the optimal cutting places to connect many shorter fragments into bigger one using ligaze.
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HYBRYD
Library written in C with Python API for IPv6 networking
...The architecture of the code is based on brain architecture. Will put an IPv6 adress active available as soon as possible so that you can download pieces of codes. The aim of that coding was to use primary linux commands easily codable and make an object of an IPv6 connection. Moreover, the model is full-state! -
Train ML Models With SQL You Already KnowBuild and deploy ML models using familiar SQL. Automate data prep with built-in Gemini. Query 1 TB and store 10 GB free monthly.
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UniPyRange
Tool to fetch protein/DNA truncation constructs from Uniprot DB
...Lets say you want the amino acid sequence of range 128-387 from a 1000 amino acid protein - this script will help you to avoid counting mistakes by just showing you the specified sequence in amino acids and coding DNA base pairs (ideal for amplification primer design) of a specified Uniprot ID. - Requires BioPython (3) and Bioservices Package (4) (1) The UniProt Consortium UniProt: a hub for protein information Nucleic Acids Res. 43: D204-D212 (2015). (2) RefSeq: an update on mammalian reference sequences. Nucleic Acids Res. 2014 Jan 1;42(1):D756-63... -
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Schlangenaufbewahrungsbehälter
A Deliberately Non-Object-Oriented Python Interface to COMEDI
...This allows the user to interface directly with comedi-lib though the comfortable interface of a Python interpreter.Object-Orientation of the interface is deliberately not provided so the coding style will loosely mimic C -- in this way, Schlang can be used to prototype and debug complex programs that will later be written in C. -
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CDSbank
multi-sequence extraction, filtering & formatting
CDSbank is a database that stores both the protein-coding DNA sequence (CDS) and amino acid sequence for each protein annotated in Genbank. CDSbank also stores Genbank feature annotation, a flag to indicate incomplete 5’ and 3’ ends, full taxonomic data, and a heuristic to rank the scientific interest of a species. This rich information allows fully automated data set preparation with a level of sophistication that meets or exceeds manual processing. -
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metaProt
Pipeline to analyze coding regions in metagenomic projects
metaProt is a python pipeline to analyze and extract data from protein sequences found in metagenomic projects. It integrates several existing tools (HMMer, Pepstats, Blast...) to be used against custom databases. Please, read the README.txt file to find more about this. -
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Noisy Channel Simulator
Demonstrate errors in transmission of a file over a noisy channel.
This program was written to dimonstrate errors in transmission for a presentation on Claude Shannon's Noisy Channel Coding Theorem. It takes an input file, the probability of a bit being flipped, and, if specified, the size of the header of the file. The program was intended to take monochrome bitmap files as input, so that each bit refers to a pixel in the image and thus, it would be easy to see errors in the output file, as some of the pixels would be flipped; however, it will work on any input file. -
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PyEPL (Python Experiment-Programming Library) is a library for coding psychology experiments in Python. It supports presentation of both visual and auditory stimuli, and supports both manual (keyboard/joystick) and sound (microphone) input as responses.
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Codecracker is an automated judge that is used to run coding contests. It is developed by the GNU/Linux Users' Group of NIT Durgapur, India.
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