Search Results for "analyzer"
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Showing 20 open source projects for "analyzer"
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Chemical Trajectory Analyzer
A software package for processing and analyzing chemical trajectories
ChemTraYzer creates reaction models from molecular dynamics simulations. It's available as open software (MIT license). Please find a full description @ https://www.ltt.rwth-aachen.de/cms/LTT/Forschung/Forschung-am-LTT/Model-Based-Fuel-Design/Aktuelle-Projekte/~kqbf/ChemTraYzer/lidx/1 M.Döntgen, M.-D.Przybylski-Freund, L.C.Kröger, W.A.Kopp, A.E.Ismail, K.Leonhard, "Automated Discovery of Reaction Pathways, Rate Constants, and Transition States Using Reactive Molecular Dynamics... -
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GeigerLog
Python program for Geiger counters and Environmental Sensors
GeigerLog is a combination of data logger, presenter, and analyzer, and is now released in version 2.1! Based on Python (Version 3), it runs on Linux, Windows, Macs, Raspberry Pi, and other. GeigerLog is WiFi-enabled for servers and clients; it can be monitored by SmartPhone. Initially developed for Geiger counters, it is now a more universal tool, which equally well handles data like temperature, air-pressure, humidity, CO2. -
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SASA Tool
SWATH-Auto System Analyzer Tool, SASA Tool
SWATH-Auto System Analyzer Tool, SASA Tool, is a novel SWATH platform for non-targeted metabolomics data analysis with an accurate mass spectral library for metabolite identification using SWATH acquisition mode. -
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QuCAT
Quantum Circuit Analyzer Tool
QuCAT stands for Quantum Circuit Analyzer Tool. This open source python library provides standard analysis tools for superconducting electronic circuits, built around Josephson junctions. QuCAT features an intuitive graphical or programmatical interface to create circuits, the ability to compute their Hamiltonian, and a set of complimentary functionalities such as calculating dissipation rates or visualizing current flows in the circuit. -
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pyrpl
PyRPL turns your Red Pitaya into a powerful analog feedback device.
The Red Pitaya is a commercial, affordable FPGA board with fast analog inputs and outputs. This makes it useful for quantum optics experiments, in particular as a digital feedback controller for analog systems. Based on the open source software provided by the board manufacturer, PyRPL (Python RedPitaya Lockbox) implements many devices that are needed for optics experiments with the Red Pitaya. PyRPL implements various digital signal processing (DSP) modules (see features below). It allows... -
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Microarray assosiated motif analyzer
Cis-element prediction tool from microarray data
We developed a novel clustering-free method, microarray-associated motif analyzer (MAMA), to predict novel cis-acting elements based on weighted sequence similarities and gene expression profiles in microarray analyses. Simulation of gene expression was performed using a support vector machine and based on the presence of predicted motifs and motif pairs. The accuracy of simulated gene expression was used to evaluate the quality of prediction and to optimize the parameters used in this method. ... -
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aioulinux
Linux for Arduino and Makers developers
Hello, I'm the Aioulinux founder, eager to professionally revive the project. Since 2018, the demand for an IoT and Arduino-tailored environment has been evident. Seeking partners for a 2024 version targeting schools and IoT companies, aiming for a secure and comprehensive platform. If you share this vision and wish to collaborate, reach out. Let's revive Aioulinux stronger than ever! Now seeking partners: Live Distro Specialist: Expert in live distributions to ensure... -
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This is an implementation of post-process phonon analyzer, which calculates crystal phonon properties from input information calculated by external codes, e.g., first-principles calculation code.
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KAPPA (Key Aminoacid Pattern-based Protein Analyzer) is a sequence search program dedicated to the discovery and clustering of proteins defined by a key aminoacid pattern.
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binana
BINANA (BINding ANAlyzer) is a python-implemented algorithm for analyz
BINANA (BINding ANAlyzer) is a python-implemented algorithm for analyzing ligand binding. The program identifies key binding characteristics like hydrogen bonds, salt bridges, and pi interactions. As input, BINANA accepts receptor and ligand files in the PDBQT format. PDBQT files can be generated from the more common PDB file format using the free converter provided with AutoDockTools. -
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mitoMaker
mitoMaker - a mitochondria pipeline wrapper script
Mitomaker is a pipeline wrapper, result analyzer and automated annotator, written in Python v2.7, that, with the help of other programs, builds, analyzes, looks for the best build and annotates target genomes (such as mitochondria and cloroplast). It could be used with other targets, such as specific genes, or transcriptomes, even though that is not it's primary goal, nor thoroughly tested. -
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The Microchip PICkit 2 has the ability to act as a logic analyzer and I/O probe. This project provides a reverse engineered libusb user space device driver and GUI to provide this functionality for users of unsupported operating systems.
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QuickDicom is an easy to use dicom medical imaging package for Mac OSX, providing QuickLook, Spotlight, Quartz Composer, Window/Level and a dicom file analyzer. Also included is the iiDicom Framework for image/dictionary usage in Objective C and Python.
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A configurable knowledge management framework. It works out of the box, but it's meant mainly as a framework to build complex information retrieval and analysis systems. The 3 major components: Crawler, Analyzer and Indexer can also be used separately.
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File-Spector is a small, fast and easy to use binary file analyzer and Inspector. It allows the users to format a complete binary file structure and then use it to read any binary file that matches the specified format.
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.ESA file editor (VOC71M Environnement S.A. analyzer), with comprehensive and facility improuvments.
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ACF is a framework for writing model-checkers. ACF is built on the fundamental observation that the structure of most model-checking algorithms is independent of the formalism used to describe the system.
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Distributions Networks Analyzer (DNA) is a tool for simulating (power flow) and analyzing electrical distribution networks. Users can easily implement and test their own power flow, optimal power flow and control algorithms.
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