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This is a collection of different little tools written in MATLAB, JAVA, Python. They all have to to do with Imaging & Microscopy for life science research and related topics or problems. Some of them are meant to be used with ImageJ and MicroManager.
A simple messaging system designed for rapid deployment on robotic platforms. Based on the venerable Inter-Process Communication Package, simpleIPC offers several key extensions: units, auto-discovery, message descriptors, and a Python wrapper. See Soto.
Fplanner will be desktop application that helps women to find their fertile days and plan to conceive. It was going to be web-based. but due to it's destination it will be simple desktop application mainly for Windows.
Collection of wrappers for textile composite modelling package TexGen and a variation of structural FEA packages (baseline being Calculix) to allow extraction of 3D mechanical property data.
Create a series of programs to help ABAQUS users from creating models to retrieve results.
Partially dump the slow and resource-consuming CAE interface.
CCPNGrid is a Plone add-on to create a web portal which intends to provide the scientific NMR community with the means to process, analyse and execute advanced 3D-structure calculation and validation software all in a straightforward and simple way.
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Investigation the concept of speed knowledge acquisition through speed reading and visual display. The initial version should be based on the concept provided by Dictator and should be a variable speed reader, handling TeX formatted files. Project design
Python program devoted to study the relationship between cells during inmune response. It is based on a 3D periodic boundary conditions grid where cells see each other and react according to certain movement, growth and interaction rules.
Easing the identification of high quality PLGS identified peptides
This software tool assists in the identification of PLGS identified peptides that provides high quality HDX information. The output file is formated so it can be directly imported into DynamX. This tool requires that the user has python installed.
Accelerometer-based wireless wind and rain sensor.
This is a university project that aims to create a partial weather sensor (rain + wind) using just one accelerometer (LIS302DL), a PIC (18f2520), two ZigBee 802.15.4 modules and a PC.
pypub is a Python library and application for downloading, storing, and analyzing biomedical literature MEDLINE records from PubMed (http://www.pubmed.com) in response to a user query.
A benchmarking utility providing administration of the benchmarking procedure and a web interface for public access on the results. The goal is to have an automated procedure after the benchmark specification.