BushMan is a web interface and a quality assurance tool for biological sequence assembly.
It is a small application that helps process chromatograms, and it assembles using Phred and Phrap. It produces a FASTA formatted consensus sequence.
a webbased multiuser bibliography management tool. it allows to convert to bibtex, bibtexml and other formats such as html, text,.. the user is allowed to define own formats via xsl style sheets. anonymous users can be allowed to browse lists
PARs is a bioinformatics tool for the analysis of cis-regulatory DNA sequences. Composed of two parts: a suite of sequence analysis algorithms for predicting cis-binding sites in DNA sequences and a GUI for visualisation and exploration of the results.
Biological Annotation Tool is a general-purpose high speed environment for manipulating biological sequence annotations in multiple input and output formats. A plugin-style API permits much extensibility.
Crawl a LiveJournal-based blog hosting for friends data. LiveJournal is a blog hosting engine that allows its users to list others as friends. This tool can download most of the data about friendship relations between users for later processing.
Cellogica is a cellular logic analysis tool. It incorporates sequential logic and finite state machine to elucidate the relationship between transcription factors and corresponding gene expression.
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This project is a tool for developers on modular robotics. You can create modular robots, movements for each servo of the robot, simulate the robots. Also it has an API for creating your own Python scripts.
Yabman is a tool for managing bibliographic references. Its key features are a quality user interface, a carefully designed data model, and sophisticated three-state hierarchical reference labeling. It is currently usable but in a pre-alpha stage.
Open source development of a tool for the astronomy community to interact with the GRB Coordinates Network (GCN) broadcast of real-time gamma-ray burst (GRB) and X-ray Flash (XRF) information. Support for satellite packets: HETE-2, Integral, Swift
DNAID software is a tool for assessing confidence in biological identifications made by comparing DNA sequences. It allows DNA sequences to be placed within a taxonomy and determines confidence in matches of a query sequence to each taxon.
Pyfort is a tool for creating extensions to the Python language with Fortran routines. It supports F77-interfaced routines now, with plans for supporting more of F90 later.
Python library to convert networks from/to many different formats, like the ones used in Pajek, Cytoscape and other popular graph formats like GML. It also includes support to integrate experimental data to the netowork.
A mouse tracker for OS X. The tool should provide a simple way to log the user's mouse movements in the background for (later) analysis. Currently only for Mac OS X (ObjC & Cocoa), planned to make platform independent with Python. It consists out of two
GnuPinch is a pinch analysis and supertargeting tool. GnuPinch can calculate heat exchanger networks (HEN) with minimum energy requeriments and minimum cost. It also can calculate other parameters of the pinch analysis of a chemical process.
Dowser is a research tool for the web. It clusters results from search engines, associates words that appear in previous searches, and keeps a local cache of all the results you click on in a searchable database. It helps you keep track of what you find.
Net.py is a tool for learning about neural nets. Currently, it only allows the user to experiment with a Hopfield net. I am now extending it to cover the Kohonen net. I'd be pleased to receive suggestions and criticism.
Pymerase is a tool intended to generate a python object model, relational database, and an object-relational model connecting the two. However it has been extended to also output webpages and can be easily extended to output whatever else you might like.
KAstrometry is a Astrometry program for the KDE Desktop Environment. It aims to be a good tool to make measurements of objects in space from images taken by CCD cameras. Such measurements might be used to find orbits of astroids.