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gCoder is a GUI, server-client based dyanmic programing contest controler built in Python. Its a programing contest controller like pc^2 and TopCoder(TM) areana. It use system test module, which can actually test contestent codes without any human interf
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Cleaver is a program for comparing restriction endonuclease digests of orthologous DNA sequences from different taxa. It performs virtual restriction digests and searches for endonucleases that cleave DNA fragments from given taxa but not others.
Tk-based standalone graphing system and extensible graphing library with a huge range of 2d modes (maybe 3d soon?) written in Python (Python/Tk are 100% cross platform)
cl-calc aims to be a simple command line calculator. It can handle precedence unlike a lot of graphical calculators. cl-calc is written in Python and requires PLY (Python-Lex-Yacc).
The Flamenco search and browse interface framework uses hierarchical faceted metadata to allow users to both refine and expand queries, while maintaining a consistent representation of a collection and seamlessly integrating keyword queries.
The goal of Motorsport is to become the most realistic simulation of wheeled vehicles possible. The addition of cars and tracks will be a simple task, and there will be a system for customization of most of the simulator features.
Kura is a complete, professional system for the handling of linguistic data, especially fieldwork data from small-corpus languages. It allows users to enter texts in any language and analyze those texts
The Liberlab project aimed in 2004-2006 to promote scientific experimentation through the creation and use of a digital lab at a very low cost (15 €/$). Don't link to old site (URL squatting). See archive (http://sites.google.com/site/liberlabsite)
Space Time Analysis of Regional Systems: Combines a suite of geocomputational and dynamic visualization modules for the exploratory analysis of data measured for spatial and temporal units.
SeqFreed is a bioinformatics desktop. It provides efficient access to sequence data and gene features, a customizable command line interface to locally installed bioinformatic tools and flexible display of either text or images in different page modes.
GerbTool is a set of tools for modifying gerber and excellon drill files. GerbTool can be used to tile multiple gerber files as a single job, and can be run interactively or in batch mode.
Yabman is a tool for managing bibliographic references. Its key features are a quality user interface, a carefully designed data model, and sophisticated three-state hierarchical reference labeling. It is currently usable but in a pre-alpha stage.
Banyan is an enterprise class, web based, information management system that helps people work collaboratively to solve complex problems. Banyan increases project performance and reduces risk through the power of collaborative clear thinking.
ProcessViewBrowser & ProcessViewServer represent an OpenSource attempt to industrial process visualization. It is based on Qt and is very portable. (Now also available as commercial software)
clusterviz allows to cluster three-dimensional data. The clustering process is visualized using OpenGL. As clustering algorithms the family of k-means algorithms is implemented, including mixture models.