Showing 946 open source projects for "gnu science"

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  • 1
    pyGear

    pyGear

    Precise gear geometry generator for spur and helical gears

    A python gear generator that serves as CAE/CAD-preprocessor for involute gears based on pythonOCC. It allows for the computation of dynamic properties and the creation of exact geometries from a minimal input set. PyGear can simulate the tool geometry and kinematics of standard gear hobbing tools to generate precise flank, tooth root and tip geometries.
    Downloads: 0 This Week
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  • 2
    CutePy

    CutePy

    Lightweight Qt-based Python console with variable explorer and history

    CutePy is a lightweight Qt-based Python 3 console with variable explorer, command history, syntax highlighting and customizable startup script. Originally it was developed for simple scientific calculations as a replacement for e.g. Windows calculator or Python IDLE. Therefore its main aim is to start fast and provide more comfortable dealing with variables based on the Python language. However in the end it is a regular Python console and therefore can be used for almost any task.
    Downloads: 0 This Week
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  • 3
    plot.py

    plot.py

    direct data plotting and evaluation

    The Plot.py project tries to supply a measurement data visualization and treatment framework being easy to use while keeping the freedom for advanced users to execute additional data treatment algorithms. Plotting is done via gnuplot and the script used to produce the graphs can be exported for later use/changes. Many raw experimental data types (mostly of x-ray and neutron scattering experiments) are supported with more to be added on user request. The data treatment includes...
    Downloads: 0 This Week
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  • 4

    Arabic Corpus

    Text categorization, arabic language processing, language modeling

    The Arabic Corpus {compiled by Dr. Mourad Abbas ( http://sites.google.com/site/mouradabbas9/corpora ) The corpus Khaleej-2004 contains 5690 documents. It is divided to 4 topics (categories). The corpus Watan-2004 contains 20291 documents organized in 6 topics (categories). Researchers who use these two corpora would mention the two main references: (1) For Watan-2004 corpus ---------------------- M. Abbas, K. Smaili, D. Berkani, (2011) Evaluation of Topic Identification Methods on...
    Downloads: 14 This Week
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    e-Species

    e-Species

    A taxonomically intelligent biodiversity search engine

    This is a pure Python CGI-based implementation of a taxonomically intelligent species search engine. It searches biological databases for a taxonomic name. The search is done "on the fly" using web services (SOAP/XML) or URL API's.
    Downloads: 1 This Week
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  • 6
    Virtual Laboratory Environment

    Virtual Laboratory Environment

    A multi-modeling and simulation environment to study complex systems

    VLE is a multi-modeling and simulation environment to study complex dynamic systems. VLE is based on the discrete event specification DEVS. and it implements the DSDE formalism (A merge of Dynamic Structure DEVS, DSDEVS, with Parallel DEVS, PDEVS). VLE provides a complete set of C++ libraries, called VFL (VLE Foundation Libraries), to develop DEVS models, to gets results of simulations, to launch simulation on cluster. The models can be developed with the DEVS formalism or with the classical...
    Downloads: 2 This Week
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  • 7
    A Python interface to the GSL library. The wrapper covers nearly everything GSL provides.
    Downloads: 0 This Week
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  • 8
    PyTom

    PyTom

    http://www.sciencedirect.com/science/article/pii/S1047847711003492

    PyTom is a toolbox developed for interpreting cryo electron tomography data. All steps from reconstruction, localization, alignment and classification are covered with standard and improved methods. Please sign up to our mailing list to keep up with the most recent updates and versions.
    Downloads: 0 This Week
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  • 9

    YFitter

    Fitting Y chromosome haplogroups by maximum likelihood

    Yfitter is a program for assigning Y chromosome haplogroups to individuals sequenced at low coverage. It is designed to be used in a samtools/bcftools pipeline. Yfitter also supports haplogrouping using chip genotype data.
    Downloads: 0 This Week
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  • 10

    CIF2Cell

    Generating cells for electronic structure calculations from CIF files

    CIF2Cell is a tool to generate the geometrical setup for various electronic structure codes from a CIF (Crystallographic Information Framework) file. The program currently supports output for a number of popular electronic structure programs, including ABINIT, ASE, CASTEP, CP2K, CPMD, CRYSTAL09, Elk, EMTO, Exciting, Fleur, FHI-aims, Hutsepot, MOPAC, Quantum Espresso, RSPt, Siesta, SPR-KKR, VASP. Also exports some related formats like .coo, .cfg and .xyz-files. The program has been published...
    Downloads: 2 This Week
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  • 11
    GDL - GNU Data Language, a free IDL (Interactive Data Language, see http://ittvis.com/idl/) compatible incremental compiler.
    Downloads: 3 This Week
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  • 12
    PaCal
    ProbAbilistic CALculator - a package for computing with probability distributions
    Downloads: 1 This Week
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  • 13

    darc

    Durham Adaptive-optics Real-time Controller

    darc, the Durham Adaptive optics Real-time Controller. For documentation or darctalk client only, select "View all files". For the latest bleeding-edge version, please use: git clone git://git.code.sf.net/p/darc2/code darc (no password required) (this changed May 2013 due to a sourceforge update). If you use darc, please cite with: Basden, A and Myers, R, MNRAS Vol 242, page 1483, 2012
    Downloads: 0 This Week
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  • 14
    SCRAM

    SCRAM

    Probabilistic Risk Assessment Tool

    SCRAM is a free and open source probabilistic risk analysis tool. The tool is under development to include fault tree, event tree, common cause, and other standard analyses.
    Downloads: 12 This Week
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  • 15
    Qutranpy

    Qutranpy

    Interactive electronic quantum transport

    Interactive program to perform quantum transport calculations by means of the Landauer and scattering matrix formalism, in a two terminal geometry. The Hamiltonians of leads and scattering region can be modified, adding exchange fields, mass, spin-orbit coupling or superconductivity.
    Downloads: 0 This Week
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  • 16
    Quantum Honeycomp

    Quantum Honeycomp

    Interactive program to calculate electronic properties in graphene

    Calculate electronic properties of graphene-like systems with a user friendly interface. The code uses the tight binding approximation and it is able to stude in a 0D, 1D and 2D geometries, orbital and magnetic fields, intrinsic and extrinsic spin-orbit coupling, sublattice imbalance, and interactions at the mean field level. The most recent version can be found in https://github.com/joselado/quantum-honeycomp Example...
    Downloads: 0 This Week
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  • 17
    owfs and owhttpd

    owfs and owhttpd

    Project moved to https://github.com/owfs/owfs/

    Please note that OWFS source code, and all Issue/Tickets/merge requests have now been moved to https://github.com/owfs/owfs/. Developer mailing lists will still be kept at Sourceforge. ---- OWFS -- 1-Wire file system. Use the Dallas 1-Wire and iButton chips with standard filesystem commands. Create temperature loggers. Monitor everything. OWHTTPD -- same system, only used as a light weight web server. OWFS is also ported to embedded routers, Mac OSX and Windows. Basically you can use...
    Downloads: 27 This Week
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  • 18

    PyMathProg

    An easy and flexible mathematical programming environment for Python.

    PyMathProg is a Python reincarnation of AMPL and GNU MathProg modeling language, implemented in pure Python, connecting to GLPK via swiglpk. Create, optimize, report, change and re-optimize your model with Python, easily integrate database, plotting, etc.
    Downloads: 0 This Week
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  • 19

    Construct2D

    COmputational fluid dyNamics STRUctured grid CreaTor for 2D airfoils

    Construct2D is a grid generator designed to create 2D grids for CFD computations on airfoils. The grids are generated in Plot3D format. The only required input file is the set of coordinates defining the airfoil geometry, using the same format as XFoil, the popular vortex-panel code for airfoil analysis. Construct2D can create grids with O topology (recommended for airfoils with a blunt trailing edge) or C topology (recommended for airfoils with a sharp trailing edge). Now available in...
    Downloads: 13 This Week
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  • 20

    lr2rmats

    Long read to rMATS

    lr2rmats is a Snakemake-based light-weight pipeline which is designed to utilize both third-generation long-read and second-generation short-read RNA-seq data to generate an enhanced gene annotation file. The newly generated annotation file could be provided to rMATS for differential alternative splicing analysis. More information can be found at https://sourceforge.net/p/lr2rmats/wiki/Home/
    Downloads: 0 This Week
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  • 21

    Inelastica

    Transport code and tools based on SIESTA and TranSIESTA (DFT-NEGF)

    NOTE: The Inelastica project moved to https://github.com/tfrederiksen/inelastica/ in February 2018. Pre- and post-processing tools for SIESTA (DFT, quantum chemistry) and TranSIESTA (quantum transport): (1) Calculate phonon frequencies, e-ph couplings, and inelastic contributions to the conductance (IETS). (2) Access Hamiltonian etc from Python. Some code documentation and installation instructions are available at this mediawiki page: http://dipc.ehu.es/frederiksen/inelastica/index.php.
    Downloads: 0 This Week
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  • 22
    ABC-SysBio implements likelihood free parameter inference and model selection in dynamical systems. It is designed to work with both stochastic and deterministic models written in Systems Biology Markup Language (SBML).
    Downloads: 1 This Week
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  • 23
    Acoustic Research Tool (ART)

    Acoustic Research Tool (ART)

    Acoustic Simulation Library for Frequency and Time Domain Simulations.

    ART is a flexible simulation framework for wind instruments. It includes a growing library of modelling elements. So far bore discontinuities, branches, tone holes, cylindrical and conical tubes, Bessel horns and bent tubes are available for frequency domain modelling. In the time domain generic bidirectional propagation elements, scattering elements, fractional delays, convolution with reflection functions and general z-domain networks are available and can be described using MuParserX...
    Downloads: 0 This Week
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  • 24
    Morinus

    Morinus

    Exquisite Astrology Software

    Astrology software for all.
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    Downloads: 53 This Week
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  • 25

    DualTranscriptDiscovery

    Transcript-discovery approach for gene feature delimitation by RNA-seq

    This project contains Python scripts usable for a dual transcript-discovery approach that improves the delimitation of gene features from RNA-seq data in the chicken model. Documentation: http://bio.biologists.org/content/biolopen/suppl/2018/01/17/bio.028498.DC1/BIO028498supp.pdf Citation: Orgeur M., Martens M., Börno S. T., Timmermann B., Duprez D. and Stricker S. (2018). A dual transcript-discovery approach to improve the delimitation of gene features from RNA-seq data in the...
    Downloads: 0 This Week
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