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QTL Reaper analyzes data from progeny of a genetic cross in experimental plants or animals. It seeks the location of genes that affect a heritable trait, and it is specially designed for analysis of gene expression measurements.
KU1K is a set of tools for 4D,5D and 6D compact U(1) lattice gauge theory Monte Carlo simulation using the Skipis-Vantzos algorithm. As the calculations involved, even for the 4D case, are consuming, the project is modular so as to run on the Grid.
DNAID software is a tool for assessing confidence in biological identifications made by comparing DNA sequences. It allows DNA sequences to be placed within a taxonomy and determines confidence in matches of a query sequence to each taxon.
Medical Image Computing Workflow (MICFlow) is a simple, easy but flexible, extensible and powerful workflow system to automate medical image computing tasks such as segmentation, registration and analysis. It's pure Python so can be used on any platform
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This is a implementation of the 'enhanced Topic-based Vector Space Model' (eTVSM) using the python language. A Java-Version and maybe other java-code contributions are planned.
PyDespike is a cross platform (Windows, Mac, Linux) program written in Python using the PyQt and PyQwt libraries used to graphically process (despike) raman or other spectroscopic data in an efficient manner.
SIP (Sample Inventory Program) is a web application for managing mass quantities of lab samples. It is the first out-of-the-box Zope 3 app, and is field-proven.
SIP may be used as-is, or as inspiration for other Zope 3 apps. (e.g. O/R RDBMS storage)
yaucp, Yet another uController Project. Is a set of tools and source of code and information for developing for the AVR families of microcontrollers under Linux using only GPL-compatible tools, released under the GPL.
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A collection of modules and enduser tools designed to help design, test and use system models. While my research (hence, the examples) is focused on hydro-ecological systems, the program can be used on any system characterized by ODEs (and soon PDEs?)
ScientificIcons is a central repository of icons for scientific programs, including molecular biology, lab automation, sample tracking, chemistry, biology, physiology, etc. Looking for an icon for a flask, chemical, gene, plate, robot, atom?
A mouse tracker for OS X. The tool should provide a simple way to log the user's mouse movements in the background for (later) analysis. Currently only for Mac OS X (ObjC & Cocoa), planned to make platform independent with Python. It consists out of two
A Open Source project with the main goal to make a simple way to display 3D objects from a Geodatabase (PostgreSQL/PostGIS) on the Web. This project was created by OpenGEO (www.opengeo.com.br).
C++ template class library and Python modules for Computational Analytic Geometry, which define classes of geometry objects in 2D and 3D Cartesian coordinate system, such as line, circle, curve ... as well as relations and transform operations of them.
Disease Gene Profiler (DGP) comprises of a set of (bioinformatics) tools that can be used to identify the genes underlying susceptibility to common multifactorial diseases (such as diabetes, asthma and cancer) using freely available datasources.
pystats is a comprehensive Python module implementing algorithms for statistics and information theory, including probability distributions, descriptive statistics, analysis of variance, regression, and inference.
Robotic Manipulator Development and Simulation Environment in Python and Blender. IMPORTANT: Development moved to github. http://github.com/ajnsit/r2d3
The NHD Software Project is a collection of the utilities, scripts, APIs, standards, and application extensions used for the quality assurance of stream and river data, conflation/generalisation of hydrographic data, and other hydrologic data maintenance.
Driver support for 3D Controller Hardware. We hope to support SDL Input, DirectInput, and other major controller API's including game consoles and embedded systems.
Centralized External Input (CEXI) Toolkit allows large display input devices (e.g., Smart Board) to be accessed in high level languages (e.g., Java, Microsoft .NET). CEXI Toolkit removes the requirement to use low level input SDKs so programmers can dir
This project provides one or more subset solutions for the UK National Health Service National Programme for IT. This project provides basic tools for the production and maintenance of SNOMED CT Clinical Terminology subsets.