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Freeode is a compiler for the SIML programming language. It is a specialized language to solve differential equations. The compiler creates a python program that uses Numpy and Scipy to do the numerical computations.
Code repository for the Laboratory for Genome Bioinformatics at Texas A&M. The LGB project was initiated primarily to support biologists at Texas A&M needing help with bioinformatics in order to use new genomic technologies.
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Berlin/Bavarian Elektrotrom Cargo Concept Solver (BECCS) is a submission to the 2008 Informaticup Contest. It's a Web Application that constructs a euclidian steiner tree.
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The RNA Ontology Consortium proposed a translation the RNA backbone angles to 46 clusters ('suites') and hence unique names. This project calculates the suites from RNA 3D structures, and to search on a Java-based index structure of known folds.
AUVNetSim is a simulation library for testing acoustic networking algorithms, written in Python, making extensive use of the SimPy discrete event simulation package.
This a python based Molecular simulator in the first stages of devlopment,right now the little simulator engine is capable of: viewing of .MOL files with rendering ,Analyses of bend length,Calculation of Energies
Automated supernova finder is a software package to automatically compare FITS images to a nominated reference image with the aim of finding supernovae or other optical transient phenomena.
MePrId is a Python program which can be used to classify a protein, depending whether it is a membrane or a globular protein. Download link: http://meprid.svn.sourceforge.net/viewvc/meprid.tar.gz?view=tar
Comparer is a document comparer program. The initial task of the comparer is to find the likeness of all documents given to it by generating a graph of all usable connections between documents.
This is a collection of different little tools written in MATLAB, JAVA, Python. They all have to to do with Imaging & Microscopy for life science research and related topics or problems. Some of them are meant to be used with ImageJ and MicroManager.
A simple messaging system designed for rapid deployment on robotic platforms. Based on the venerable Inter-Process Communication Package, simpleIPC offers several key extensions: units, auto-discovery, message descriptors, and a Python wrapper. See Soto.