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Packaging code for SnapPea, a program for creating and studying hyperbolic 3-manifolds.
This is for packaging ONLY. SnapPea itself (and its successor SnapPy) can be found at: http://www.math.uic.edu/t3m/SnapPy/
DEODAS designs & analyzes consensus-degenerate oligonucleotide probes for biological research. DEODAS automatically designs and screens, probes against databases of known genes & stores the information in a searchable database.
FreePM is an opensource physicians practice management / electronic medical record application.
The company providing support for FreePM nolonger exists. You may consider TORCH http://sourceforge.net/projects/op-torch/
or one of the other FOSS EMR's.
A gnome mathematical GUI designed to be a central tool where you can launch various other existing mathematical tools.
It now supports Numerical Python Session, and more soon.
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Pfem is a python-based finite element program aimed at
solving solid mechanics and heat transfer problems with
flexibility, efficiency and sound object-oriented design.
Mathfun.py is a Python library that contains those little bits of mathemagical ideas that we all enjoy. Primes, prime factorization, Fibonacci sequences, string2value functions...
ACF is a framework for
writing model-checkers.
ACF is built on the fundamental observation that the structure of most
model-checking algorithms is independent of the formalism used to describe
the system.
Freeode is a compiler for the SIML programming language. It is a specialized language to solve differential equations. The compiler creates a python program that uses Numpy and Scipy to do the numerical computations.
PyEsp - Enhanced/Evolving/Extensible Semantic Profiling.
This Python program will sort and filter search results by applying semantic profiling on web pages. The program will learn the user preferences and profiling will be done on the client computer.
A benchmarking utility providing administration of the benchmarking procedure and a web interface for public access on the results. The goal is to have an automated procedure after the benchmark specification.
aVolve is an evolutionary/genetic algorithm designed to evolve single-cell organisms in a micro ecosystem. It currently uses the JGAP Genetic algorithm, but does include a primitive genetic algorithm written in Python.
Code repository for the Laboratory for Genome Bioinformatics at Texas A&M. The LGB project was initiated primarily to support biologists at Texas A&M needing help with bioinformatics in order to use new genomic technologies.
Automated supernova finder is a software package to automatically compare FITS images to a nominated reference image with the aim of finding supernovae or other optical transient phenomena.