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MutationFinder is a biomedical natural language processing (NLP) system for extracting mentions of point mutations from free text. MutationFinder achieves high performance (99% precision, 81% recall on blind test data) as an information extraction system
PetriKit is a modular toolkit for Petri Net analysis. It allows the extraction of basic properties, extraction of invariants, and generation of reachability graph. Results can be formatted in plain text, HTML or XML files.
WikiPDF is a mediawiki extension based on Wiki2PDF that adds PDF/LaTeX features to mediawiki. Wiki2PDF is a python script to convert multiple articles of a mediawiki based wiki (pre-configured to use with www.wikipedia.org) to a single LaTeX or PDF file.
FreeBlockSim is a graphical block diagram editor/simulator for use with FreeSim++. FreeSim++ is a free to use C++ block library for dinamical systems simulation. Available soon on www.estudios-electricos.com
a webbased multiuser bibliography management tool. it allows to convert to bibtex, bibtexml and other formats such as html, text,.. the user is allowed to define own formats via xsl style sheets. anonymous users can be allowed to browse lists
edef - A small simulation framework for logic circuits, autoregressive processes, digital controller circuits and many more. Also there is a GUI application, that integrates a simple development environment and a circuit editor.
PyMOlyze is a graphical program to analyze the results of quantum chemistry (HF/DFT) calculations. Features include various population analyses, fragment analysis, monitoring structures during an optimization, and a simple, but powerful, XYZ editor.
SeqFreed is a bioinformatics desktop. It provides efficient access to sequence data and gene features, a customizable command line interface to locally installed bioinformatic tools and flexible display of either text or images in different page modes.
This program will calculate and output metrics on code written in Python. Reports can be generated in text- or XML-files. A plug-in system lets new metrics be added to the program. A set of built-in plug-ins with provide some of the most common metrics a
Software to fit whole-sentence language models using the principle of maximum entropy. For developers of speech recognizers, text prediction interfaces, OCR, machine translation software.
Latex editor with document structure tree view and project handling. Latex output allows direct jump to warnings/errors. Projects folders gives support for figures/graphs. Editor component includes usual features like search/replace and syntax highlight.
This project presents a functional prototype of a new kind of file manager, where the data is auto organized using the semantic content.
The Souvenirs system propose a new complete interface for the user and pretend to remplace the "desktop" paradigm.
Latex2slides is a simple graphical program that produces a set of HTML/JPEG slides from a TeX or LaTeX source. Each Postscript page is converted to a JPEG image using ImageMagick's convert. The program then makes one HTML page for each JPEG (or slide), a
A ContextTree is a way of dynamically forming relationships between information: the same information can be viewed in different ways, depending on what you want from it.
SimNetQ is a discrete simulator of waiting queues networks. It is initially the result of the diplom work of Laurent Burgbacher. It provides a graphical diagram editor, a graphical simulator and a statistical analysis module.
JReferences is a tool to store and retrieve bibliographic references from a file or MySQL database.
It reads BibTeXML, DocBook XML and RIS type references, and can output these and BibTex.
A bibtex like alternative is also provided for DocBook XML docu
A TextMap module for Python.
The TextMap class can be used to emulate oldfashioned computer screens. It will have methods like writexy(x,y,text),
input = readxy(x,y,text), clear(), scroll(x,y),
change(coloroptions), settext(text), input = gettext()
SchemaDoc is a XML-based markup language for documenting XML schemas. The work products include both the vocabulary and a set of tools for combining it with the schema source (e.g. a DTD) to produce documentation in HTML, XML DocBook, LaTeX, etc.
TeXPerfect plans to be a cross-platform, extensible, user-friendly yet expert-tunable visual TeX implementation. The most important feature will be a split screen (inspired by WordPerfect(R) Reveal Codes) showing the underlying TeX code.
Signal Processing and Classification Environment in Python using YAML
pySPACE is a modular software for processing of large data streams that has been specifically designed to enable distributed execution and empirical evaluation of signal processing chains. Various signal processing algorithms (so called nodes) are available within the software, from finite impulse response filters over data-dependent spatial filters (e.g. CSP, xDAWN) to established classifiers (e.g. SVM, LDA). pySPACE incorporates the concept of node and node chains of the MDP framework. Due...
The main idea behind this project is the use of a common text to enclose a message by manipulating the structure of the semantic tree of each phrase in the text.