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An agent-based situated language learning simulation that focuses on lexical learning and grounding, featuring a unigram syntax structure and a CFG-based semantic grammar. Created as a MSc thesis project, using python.
QDeblend3D is a dedicated software tool for the deblending of QSO and host galaxy emission in 3D datacubes obtained with optical IFU spectrographs. The GUI allows to control the process and to visualize the results with an integrated cube viewer.
QuickFlash is a C++-based analysis library for data files generated by the Flash hydrodynamics code. It provides high-performance access to large datasets in low memory situations and other restrictive environments.
The SIMP/STEP platform provides a fast, efficient, portable abstract framework for interactive and scripted cellular automata and lattice gas computing in the Python environment. SIMP provides a high-level 'programmable matter' laboratory built on
ScardFace is a python3k library for interfacing with smart cards, which supports Plug-and-Play readers inclusion and threading. It also offers classes for manipulating APDU cmds and resps, and use them in a transport-protocol-independent fashion.
QGis Python Plugin to create named map themes to switch the visibility of all layers belonging to theme.
Experimental working prototype with functionality to include in future version of QGIS.
GUI program to perform multiple searches on proteins for specific groups of amino acids in specific protein regions and to be able to filter by signalp scores. I hope to add lots of new functionality including the ability to create local database
Manage what you buy and how you buy it with Order.co, so you have control over your time and money spent.
Simplify every aspect of buying for your business in Order.co. From sourcing products to scaling purchasing across locations to automating your AP and approvals workstreams, Order.co is the platform of choice for growing businesses.
Gaphor is a UML modeling environment written in Python. Gaphor is small and very extensible.
The repository is located at http://github.com/gaphor/gaphor.
Simple Molecular Interaction Potential Generator in Python
Molecular Interaction Potential Generator
MIPGEN is a python program that will calculate Molecular Interaction Potential grids
over a given molecule, that could be either a protein or a small organic compound (drug).
The output will be a series of grids with DX format (*.dx) that the user will be able
to visualize using any Molecular visualization program like VMD, PyMol, Chimera...
For more information on dependencies and usage, please read the Documentation.
Users are welcome...
PyAnnotation is a Python Library to access and manipulate linguistically annotated corpus files. Supported file formats are Kura XML, Elan XML and Toolbox files. A Corpus Reader API is provided to support statistical analysis within the NLTK.
BoulderALE is an RNA alignment editor, which allows for the annotation of basepairs, annotation and collapsing of features (horizontal) and sequences (vertical), along with 2D display of sequences and base composition given a secondary structure.
pydaqtools provides a common interface to data-acquisition hardware for Python. Control analog/digital output or acquire analog/digital input for immediate analysis with Python for scientific, educational or engineering applications.
A genetic algorithm in Python for evolving programs that write a given string to an allocated dataspace, using a made-up machine language with only 7 instructions and flow reversal.
This project is a complete cross-platform (Windows, Linux) framework for Evolutionary Computation in pure python. See the project site at http://pyevolve.sourceforge.net or the blog at http://pyevolve.sourceforge.net/wordpress
Java based multi-agent platform built on an organizational model (agent, group, role). MadKit provides general agent facilities (lifecycle management, message passing, distribution, ...), and allows high heterogeneity in agents.
A set of python programs for forward modelling of marine notch formation, along with an pseduo-inverse model for obtaining relative sea level curves from notch data.