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SIP (Sample Inventory Program) is a web application for managing mass quantities of lab samples. It is the first out-of-the-box Zope 3 app, and is field-proven.
SIP may be used as-is, or as inspiration for other Zope 3 apps. (e.g. O/R RDBMS storage)
A collection of modules and enduser tools designed to help design, test and use system models. While my research (hence, the examples) is focused on hydro-ecological systems, the program can be used on any system characterized by ODEs (and soon PDEs?)
ScientificIcons is a central repository of icons for scientific programs, including molecular biology, lab automation, sample tracking, chemistry, biology, physiology, etc. Looking for an icon for a flask, chemical, gene, plate, robot, atom?
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A mouse tracker for OS X. The tool should provide a simple way to log the user's mouse movements in the background for (later) analysis. Currently only for Mac OS X (ObjC & Cocoa), planned to make platform independent with Python. It consists out of two
Traditional but powerful cross-platform calculator. It is written in python and it uses wxWidgets as GUI (project is developed with Boa Constructor). By use of SciPy the vaCalculator can solve linear systems, do math with polynomials, integration etc.
MayaVi is a free, cross platform, easy to use scientific data visualizer. It provides a GUI to ease the visualization process, is written in Python and uses the Visualization Toolkit (VTK) for the graphics.
C++ template class library and Python modules for Computational Analytic Geometry, which define classes of geometry objects in 2D and 3D Cartesian coordinate system, such as line, circle, curve ... as well as relations and transform operations of them.
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Python library to convert networks from/to many different formats, like the ones used in Pajek, Cytoscape and other popular graph formats like GML. It also includes support to integrate experimental data to the netowork.
Disease Gene Profiler (DGP) comprises of a set of (bioinformatics) tools that can be used to identify the genes underlying susceptibility to common multifactorial diseases (such as diabetes, asthma and cancer) using freely available datasources.
pystats is a comprehensive Python module implementing algorithms for statistics and information theory, including probability distributions, descriptive statistics, analysis of variance, regression, and inference.
Robotic Manipulator Development and Simulation Environment in Python and Blender. IMPORTANT: Development moved to github. http://github.com/ajnsit/r2d3
Driver support for 3D Controller Hardware. We hope to support SDL Input, DirectInput, and other major controller API's including game consoles and embedded systems.
This program will calculate and output metrics on code written in Python. Reports can be generated in text- or XML-files. A plug-in system lets new metrics be added to the program. A set of built-in plug-ins with provide some of the most common metrics a
Software to fit whole-sentence language models using the principle of maximum entropy. For developers of speech recognizers, text prediction interfaces, OCR, machine translation software.
A tag based personal note taking system, written in python using sqlite.
This program is designed to help you organize your thoughts. It uses tags in a way similar to Gmail's "labels" or del.icio.us tags. Any contribution welcome!
Educational game framework supporting board games, strategy games, and other grid-based game boards. Currently uses Python/wxPython as the application language/library. C++ libs included to help create AI for the various games.
Unum stands for 'unit-numbers'. It is a Python module that allows defining and manipulating true quantities, i.e. numbers with units like volts, hours, meter-per-second. Consistency between units is checked for every operation involving quantities.
Maui Scheduler is an advanced reservation HPC parallel batch scheduler for use with Linux and BSD clusters. Maui provides a complete scientific scheduling solution, supporting running custom parallel and MPI jobs over Myrinet and ethernet.
SimED is a user-friendly Differential Equation simulation software. It can integrate numerically ODEs (Ordinary Differential Equations) using several methods, plot time and phase-space diagrams for variables, and interactively choose initial conditions.