Protein ALignment Optimiser (PALO) is a script for the selection and alignment of the best combination of transcripts among orthologous genes. PALO is mainly written in Python, although other programming languages are also implemented (R, Perl...).
The PooDLE IIR Experiment System Framework (PIIRExS) is a web application that enables, organizes, synchronizes and simplifies the design and conduction of task-based experiments for researchers with an interest in interactive user studies.
The SIMP/STEP platform provides a fast, efficient, portable abstract framework for interactive and scripted cellular automata and lattice gas computing in the Python environment. SIMP provides a high-level 'programmable matter' laboratory built on
Gaphor is a UML modeling environment written in Python. Gaphor is small and very extensible.
The repository is located at http://github.com/gaphor/gaphor.
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QGis Python Plugin to create named map themes to switch the visibility of all layers belonging to theme.
Experimental working prototype with functionality to include in future version of QGIS.
ScardFace is a python3k library for interfacing with smart cards, which supports Plug-and-Play readers inclusion and threading. It also offers classes for manipulating APDU cmds and resps, and use them in a transport-protocol-independent fashion.
PyAnnotation is a Python Library to access and manipulate linguistically annotated corpus files. Supported file formats are Kura XML, Elan XML and Toolbox files. A Corpus Reader API is provided to support statistical analysis within the NLTK.
BoulderALE is an RNA alignment editor, which allows for the annotation of basepairs, annotation and collapsing of features (horizontal) and sequences (vertical), along with 2D display of sequences and base composition given a secondary structure.
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pydaqtools provides a common interface to data-acquisition hardware for Python. Control analog/digital output or acquire analog/digital input for immediate analysis with Python for scientific, educational or engineering applications.
This project is a complete cross-platform (Windows, Linux) framework for Evolutionary Computation in pure python. See the project site at http://pyevolve.sourceforge.net or the blog at http://pyevolve.sourceforge.net/wordpress
Non-stealth keylogger for Windows. Records mouse and keyboard (precision~10-15ms), log of events (disk size~2.5k/s) + log of operations (~ 0.2k/s). Standalone, with local copy of Python: unzip to install, delete to uninstall.NEW: hidden/visible icon
A set of python programs for forward modelling of marine notch formation, along with an pseduo-inverse model for obtaining relative sea level curves from notch data.
Wizard-like software to run experimental procedures (at large). Each step of the procedure is a file (document, on-line form, checklist, video, program... ). Experimental data and documents are backuped together. NEW: templates of procedures
H-mito is a mitochondrial DNA haplogroup prediction tool based on the phylogenetic tree http://www.phylotree.org/. Ancillary scripts: mitoP.py to extract mutation lists and clustal-2-fasta.zip to join, align through clustalw and convert data.
ECMWF parser is a software made in python (it has a version standalone and another python dependant) to work on the data provided by ECMWF. It uses WGRIB to convert binary data to ascii and operates over the last with several functions available.
Sylli is a universal syllabifier. Developed for Italian, it can easily be adapted to any language that is claimed to respect the SSP. Sylli divides timit, strings, files and directories into syllables.