Search Results for "open-shell" - Page 41
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Showing 2179 open source projects for "open-shell"
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ROOTlib
C++ lib, that provides access to multiple ROOT routines (root.cern.ch)
This C++ lib is used and created to provide easy methods based on ROOT (a CERN data analysis framework). It was developed for use in practical courses but is not limited to. In addition it is ported step by step into Python. -
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Plotmeister is a data exploration tool. It parses your ASCII data and generates a simple (text-based) table format. You can modify this table and eventually create nice looking figures.
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Open Exchange (OpEx)
The open source Algorithmic Trading System
OpEx is an application suite that includes the main building blocks of commercial electronic trading systems. All OpEx applications run on distributed system architectures. -
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caseGen
... [BATCH], [ANALYZE] and [OPTIMIZE] cases in OpenFOAM and others
'caseGen' allows you to simplify your numerical simulation problem! Actual its not fairly tested so please contact me if you see any refinements or found bugs. -
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minder
Monitoring your infrastructure for free.
This software presents a flexible and configurable proposal for monitoring and management of real and virtual HPC infrastructures, compatible with paradigm of cloud computing. We help you to answer: 1) What is the performance of my resources? 2) What equipment and resources do we have already? 3) What do we need to upgrade or repair? 4) What can we consolidate to reduce complexity or reduce energy use? 5) What resources would be better reused somewhere else? Status: PreAlpha, so... -
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CoNIFER
Homepage for CoNIFER (Copy Number Inference From Exome Reads)
CoNIFER uses exome sequencing data to find copy number variants (CNVs) and genotype the copy-number of duplicated genes. -
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colonyzer image analysis software
Image analysis estimating cell density in arrayed microbial cultures
Image analysis software for quantification of cell density in microbial cultures (e.g. S. cerevisiae) growing on solid agar plates. Specialises in detection of extremely low cell densities. Forms part of the Quantitative Fitness Analysis (QFA) workflow: http://research.ncl.ac.uk/qfa/ Suitable for high-throughput, genome-wide analysis of culture libraries when combined with the following qfa R package: http://qfa.r-forge.r-project.org/ This is the version presented, used and... -
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Open Source Geographical Wifi Analyser Tool
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WebSynonymExtractor
a synonym extractor based on web-corpora and a multilingual translator
This project is an approach for synonym extraction and extending WordNet by the so found synonyms. The python application is realised as a kind of pipe that starts with a web-corpus-reader which is followed by several workers (tokenizers, lemmatizers, ...) and finally completed by a result writer. In contrast to the state of the art approaches, this implementation is based on single words found in the web used as a corpus and translated to other languages. If translations of different... -
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ProSym
Software package that facilitates traffic simulation
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Standalone application that uses the clipboard to insert a tag in any document and/or in a log file. Tags contain context information (e.g., date, author) + text note, picture or webcam shot. Tags can contain variables generated by user and/or external programs.
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Pysimony
A Pythonic Implementation of Parsimony Inference of Phylogeny
UPDATE: After some bug fixes, I've ditched Pysimony for Javamony: https://sourceforge.net/projects/javamony/ Given Python's beauty, I know that someday I will have to finish Pysimony. A student's first attempt at a phylogenetic inference program, written in the simplistic yet elegant Python. Pysimony reads a FASTA file (only ATGC accepted) specified as its only argument. Basic testing has shown that it is slow, inaccurate and most definitely inefficient. An... -
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WxGeometrie
Le couteau-suisse du prof de maths
Calculatrice graphique en français, destinée aux professeurs ou aux étudiants du collège et du lycée. Elle permet de faire du calcul formel, de tracer des courbes et des figures géométriques exportables en png, eps ou svg. Linux, Windows... Cette version n'est plus maintenue. Nous vous recommandons d'utiliser désormais la nouvelle version, nommée Géophar : http://sourceforge.net/projects/geophar -
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Observe astronomical library
astronomical observing tool
Observe library is an astronomical for observers that helps planning and managing observations. -
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Open Engine Simulation Project
A free software engine simulation tool written in Python and PyQT
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pylabrad development has moved to GitHub: https://github.com/labrad/pylabrad Packages are distributed through PyPI: https://pypi.python.org/pypi/pylabrad
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pyscope
Software oscilloscope using Python and tkinter
Software oscilloscope using Python and tkinter. Supports multiple sources: socket, file, audio, USB. Displays data by samples, time or frequency. Scales the input automatically or manually. It has been renamed "pdatascope" to avoid a name-clash with Pyscope, a scoping package on PyPi. See https://sourceforge.net/p/pydatascope/ for the latest code. -
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Mathemapy
A Python calculator program
Mathemapy is a feature-rich calculator made in Python. It can do multiple types of division, solve equations, expand equations and more. -
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Primer Design Tool
Design PCR primers
A simple tool to design DNA primers for mutagenesis in BGME lab (JHU). Allows users to select or enter background sequence and add current and new mutations. During the design process, users are presented with various updating checks to guide them. -
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JBoost is a simple, robust system for classification. JBoost contains implementations of several boosting algorithms in an alternating decision tree framework. In addition, JBoost provides extensible software for adding more learning algorithms.
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pyBioImage
Biological Imaging Software suite
The pyBioImage is a python a python based biological imaging suite tailored to the problem of finding Germinal Center "spots" within multidimensional microscopy images as it is described in the research paper: "Software tool for 3D extraction of germinal centers", by David N. Olivieri, Merly Escalona and Jose Faro. -
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brocc
BLAST Read and OTU Consensus Classifier
NOW HOSTED ON GITHUB: https://github.com/kylebittinger/brocc Old releases are kept here for archival purposes. -
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GemSIM is a software package for generating realistic simulated next-generation sequencing reads with quality score values. Both Illumina and Roche/454 reads (single or paired end) can be simulated using appropriate empirical error models.
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Electrophysiology & circular stats tools
Data analysis and circular statistics with OpenElectrophy and R
Set of tools for basic analysis of electrophysiological data. The Python classes show how to call OpenElectrophy functions and save data. The R library applies circular statistics to spike phase data and saves the best von Mises fit and the Rayleigh statistics on the disk. The wavelet coherence analysis is done in R by the package "sowas". Check the module R_coherence to see how we solved that problem. This packages may be useful for people who start using OpenElectrophy and circular... -
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HOPSA, high oxygen pressure sputter automation, is a Python 3 project to control a step wise sample creation Process. Although written for this specific task it is easy to adopt for any experimental task which changes hardware parameters and waits for a specific condition before proceeding. The graphical interface (QT4) includes plotting (matplotlib), instrument configuration/monitoring and a program step creator. The communication with the hardware is independent of the GUI and any number...
