Software written in Python to take oscilloscope data for a data transmit channel and a data clock as inputs, and output an eye diagram. The eye diagram helps evaluate the quality of the transmit data.
pyRREF is written in Python and it allows users to input a rectangular matrix to receive its reduced row echelon form. mimeTeX and PIL are currently used for output.
Parasol is a python framework in which mathematical models can be investigated parametrically. It enables easy optimization, sensitivity study, and visualization. Output is in plain text, HTML, and Microsoft Suite files (Excel, Word and PowerPoint).
Biological Annotation Tool is a general-purpose high speed environment for manipulating biological sequence annotations in multiple input and output formats. A plugin-style API permits much extensibility.
SciGraphica is a scientific data visualization and analysis application, supplying many of the basic plotting features for 2D and 3D charts. It features opening several worksheets and plots to work with at the same time and PS output.
This program will calculate and output metrics on code written in Python. Reports can be generated in text- or XML-files. A plug-in system lets new metrics be added to the program. A set of built-in plug-ins with provide some of the most common metrics a
Latex editor with document structure tree view and project handling. Latex output allows direct jump to warnings/errors. Projects folders gives support for figures/graphs. Editor component includes usual features like search/replace and syntax highlight.
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Pymerase is a tool intended to generate a python object model, relational database, and an object-relational model connecting the two. However it has been extended to also output webpages and can be easily extended to output whatever else you might like.
Charlemagne is a versatile genetic programming application which includes a command-line client and an interactive console mode. It features built in input-output mapping support, and is user-extensible for complex fitness evaluation in Python and Lisp
JReferences is a tool to store and retrieve bibliographic references from a file or MySQL database.
It reads BibTeXML, DocBook XML and RIS type references, and can output these and BibTex.
A bibtex like alternative is also provided for DocBook XML docu
A clearing house for various pieces of open source software which use the GenCAM data format for input or output of electronic interconnect (PWB, PCB, PWA, PCA) information.
Easing the identification of high quality PLGS identified peptides
This software tool assists in the identification of PLGS identified peptides that provides high quality HDX information. The output file is formated so it can be directly imported into DynamX. This tool requires that the user has python installed.
Maximal Clique Motif Reduction (MCMR) is a software program for running and then combining the output of multiple motif finder programs, such as MEME, AlignACE and Weeder, into a set of consensus predictions with associated confidence rankings.
...Among trimAl’s additional features, trimAl allows getting the complementary alignment (columns that were trimmed), to compute statistics from the alignment, to select the output file format , to get a summary of trimAl’s trimming in HTML and SVG formats, and many other options.