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H-mito is a mitochondrial DNA haplogroup prediction tool based on the phylogenetic tree http://www.phylotree.org/. Ancillary scripts: mitoP.py to extract mutation lists and clustal-2-fasta.zip to join, align through clustalw and convert data.
A cross-platform library that computes fast and accurate SIFT image features. libsiftfast provides Octave/Matlab scripts, a command line interface, and a python interface (siftfastpy). Optimized with SIMD instructions and OpenMP .
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Use of USB to Serial and USB to Parallel BUS CONVERTERS available from ElectronicBRICKS at http://electronicbricks.blogspot.com/search/label/usb-Brick.
Set of python scripts that can be used for the calculations of equilibrium fractionation factors from experiments and from statistical mechanics theory. python scripts use Scipy/Numpy/Matplotlib/WxPython for calculations, plotting and the GUI
ASR-Builder provides an easy-to-use interface to the HTK toolkit, that allows users to build ASR systems. ASR-Builder provides a platform that performs house-keeping tasks when using HTK and also provides default training/testing/recognition scripts.
A collection of python scripts to create and handle an XML corpus (a large collection of text for linguistic purpose) from an original Wikipedia database backup dump. It includes a regular expression based parser for the MediaWiki markup language.
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A Python IDE optimized for scripting and easy access to documentation.
Not a whole lab, just a small bench !
**Feel free to contact me via https://sourceforge.net/sendmessage.php?touser=1865508 if you want to take over this project**
Mathbench is intended for the development of short scripts such as those daily used when doing research in applied mathematics and physics. Simple widgets and a strong plugin system make it useful and extensible.
ANNOUCEMENT:
Mathbench's purpose is still relevant and could also benefit from the latest improvements of...
LabVIEW tools for executing Python Scripts. Includes a Python Script Node and a suite of VIs for executing similar functionality. LabPython palette integrates into user.lib or other palette synch'ed location.
JLink lets users author flow charts based on ISO 5807 and IBM standards. Developers can use JLink to add flowcharts to applications, serve a flow chart over the web in PDF or PNG, or dynamically create a flowchart with Javascript, Python or Ruby scripts
A module for Python which provides interface to the PARI/GP computing library. We propose to write programs for PARI using Python scripting language. Python makes code much more clean, readable and manageable than the old-style PARI scripts.
A repository of Python extension scripts for use with the Sparky (http://www.cgl.ucsf.edu/home/sparky) NMR assignment package. No packaged releases yet, but there are scripts in the Sourceforge CVS@ http://sparkyscripts.cvs.sourceforge.net/sparkyscripts
The NHD Software Project is a collection of the utilities, scripts, APIs, standards, and application extensions used for the quality assurance of stream and river data, conflation/generalisation of hydrographic data, and other hydrologic data maintenance.
REPCAL (REverse Polish CALculator) is a light and fast calculator in RPN (reverse polish notation) mode for the console (command line). It is written in 180 lines of Python code, and can be used both interactively or inside shell scripts.
BLIX is a cross-platform set of Python extension modules and Python scripts for Blender (www.blender.org). These scripts add camera calibration, 3D reconstruction and rigid body orientation to Blender.
Rana, Restriction Analysis Libraries.
Rana is written in Python and provides a set of libraries and scripts to work with restriction enzymes and ADN. The aim is to ease the development of molecular biology software for research or education purposes.
Simulator for large neuronal networks using leaky INF as its basic element. Simple few line scripts will enable rapid creation of large networks with different connectivities. Aimed at researchers interested in quickly testing large networks of neurons.