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ByoDyn (http://cbbl.imim.es/ByoDyn) is a software tool for the study of biochemical networks within the framework of systems biology. SBML compatible, ByoDyn is a group effort of the Computational Biochemistry and Biophysics Lab.
Pinkl is a library written to build flexible applications to control instruments connected to a computer using a GPIB or COM interface and take, store and plot measurements with these instruments.
PyCV is a Python package of modules useful for computer vision tasks. Its current focus is on boosting techniques, Haar-like features, and face detection. PyCV provides the world's fastest method for training a face detector, in a few hours.
Ouroborus is an artificial life framework for mobile agents on a background of cellular automata. It can be used to teach and research topics such as population genetics, ecology and evolution. The demo includes a curses view and live Csound audio.
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PowerTalk automatically speaks Microsoft PowerPoint presentations. For presenters who find speaking difficult, audiences containing people with visual impairments and fun educational uses. Uses synthesised computer speech provided with Windows
The C Protein Folding Library is a minimalistic, high-performance modular library of C functions and data structures for computing folding simulations of proteins on a wide variety of computer hardware.
Mind this project is no longer maintained. You might be interested in having a look at
http://pythonhosted.org/plasduino/
instead.
Framework for data acquisition through the parallel port, suitable for performing simple didactic physics experiment.
Quick reference for switching between mathematical computation environments for computer algebra, numeric processing and data visualisation. Examples are Matlab, IDL, SPlus, and their open-source counterparts Octave, Scilab, Python+NumPy and R.
A KDE based Computer Algebra System (CAS) that can also be used as an advanced replacement for KCalc. It is essentially a front end GUI for Maxima (and is easily extended to other CAS back-ends) and Gnuplot.
Enough lame computing! The project for re-desiging and re-writing the computer world, based on old & new ideas that have never been implemented in a practical way. Research in form of discussion is in the public forum at this sourceforge project page.
Computer Controlled Optical Microscopy is a package to enable camera equipped microscopes to generate multi-modal time-lapse image sequences
of 3D volumes. This is achieved by periodically changing optical settings, xyz positions and acquiring images.
ImageJ is a public domain Java image processing program inspired by NIH Image for the Macintosh. It runs, either as an online applet or as a downloadable application, on any computer with a Java 1.1 or later. HOME @ http://rsb.info.nih.gov/ij/
Network Visualization is a mature part of computerscience that is enjoying a good deal of growth, partially fueled by Bioinformatics. Network is a synonym for Graph, and both refer to a collection of nodes and edges.
SimNetQ is a discrete simulator of waiting queues networks. It is initially the result of the diplom work of Laurent Burgbacher. It provides a graphical diagram editor, a graphical simulator and a statistical analysis module.
GunStamp is a program which can be used where ever accurate timestamping of events are required. What it does, is to syncronize the computer clock to an external time source (a GPS) connected to a serial port, and then use this clock to timestamp events.
Python program devoted to study the relationship between cells during inmune response. It is based on a 3D periodic boundary conditions grid where cells see each other and react according to certain movement, growth and interaction rules.