Showing 65 open source projects for "automatic"

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  • 1

    nwbas2ecce

    nwbas2ecce converts nwchem basis set files to the ECCE format

    ...nwbas2ecce is a python script that aims to automate as much as possible of the conversion process of a nwchem basis set file into the files necessary for ECCE to included it in the basis set tool. The process isn't completely automatic, but I also believe that it shouldn't be to avoid stuff-ups -- however, the amount of manual editing is kept to a minimum. Note that these script are run in the terminal. The screenshot is of the basis set tool in ECCE, not this piece of software.
    Downloads: 0 This Week
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  • 2

    SpiKeDeteKt

    An automatic spike detection program to be used with new KlustaKwik

    This is an automatic spike detection program which takes account of probe geometry and produces a .mask file to be used with the new masked version of KlustaKwik. We recommend you use Python 2.6 or 2.7, e.g. a free academic version can be obtained from Entthought Python. The input files for SpiKeDeteKt are: .dat (raw data file) .probe (probe file, described below - user constructed) parameters.py (optional - otherwise it uses defaultparameters.py) SpiKeDeteKt outputs the following files: .fet.n (feature file) .mask.n (needed for using the new (masked) KlustaKwik) .clu.n (a trivial clue file where everything is put into a single cluster) .fmask.n (trial - float masks instead of binary, we are using this for testing masked KlustaKwik) .spk.n (spike file) .upsk.n (unfiltered spike waveform) .res.n (list of spike times) .xml (an xml file with all the parameters that can subsequently be used by neuroscope or klusters) .fil (highpass filtered data) .h5 (
    Downloads: 0 This Week
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  • 3
    caseGen

    caseGen

    ... [BATCH], [ANALYZE] and [OPTIMIZE] cases in OpenFOAM and others

    'caseGen' allows you to simplify your numerical simulation problem! Actual its not fairly tested so please contact me if you see any refinements or found bugs.
    Downloads: 0 This Week
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  • 4
    proper
    Command-line tool to calculate error propagation. Generates the error formulas and applies them to the data.
    Downloads: 0 This Week
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  • 5
    gsdview
    Geo-Spatial Data Viewer (GSDView) is a lightweight viewer for geo-spatial data and products. It is written in python and Qt4 and uses the GDAL library. GSDView is modular and has a simple plug-in architecture.
    Downloads: 0 This Week
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  • 6
    pyLego
    Differential-algebraic simulator in python. Process and control systems are modelled w/ bloc diagrams. It allows algebraic loops, has an automatic steady-state computation, detects singular systems, and uses variable time-step transient integration.
    Downloads: 0 This Week
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  • 7
    Khronos DES
    General purpose discrete event simulation (DES) framework for the Python programming language. Khronos gathers ideas from other simulation software and tries to provide a simple and poweful toolset for simulation of discrete systems.
    Downloads: 0 This Week
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  • 8
    MIPGen

    MIPGen

    Simple Molecular Interaction Potential Generator in Python

    Molecular Interaction Potential Generator MIPGEN is a python program that will calculate Molecular Interaction Potential grids over a given molecule, that could be either a protein or a small organic compound (drug). The output will be a series of grids with DX format (*.dx) that the user will be able to visualize using any Molecular visualization program like VMD, PyMol, Chimera... For more information on dependencies and usage, please read the Documentation. Users are welcome...
    Downloads: 0 This Week
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  • 9
    Methods and testing of methods for automatic analysis of in situ cyclic voltammetry data. This, at least initially, is the code from my masters thesis, which was done as a contribution to a larger project called Aevum. Aevum is being developed at t
    Downloads: 0 This Week
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  • 10
    Unique finds patterns in source code. It helps you build better software by finding pieces of code that could benefit from a refactoring.
    Downloads: 0 This Week
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  • 11
    RADAR stands for Rapid Automatic Detection and Alignment of Repeats in protein sequences. RADAR identifies gapped approximate repeats and complex repeat architectures involving many different types of repeats. Radar has moved to github (https://github.com/AndreasHeger/radar)
    Downloads: 1 This Week
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  • 12
    Moved to Github: http://github.com/tremby/py-translate
    Downloads: 0 This Week
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  • 13
    pyHKL is the interface to DENZO/SCALEPACK packages for X-ray crystallography data processing. It runs jobs remotely and aims at minimizing user input, by including automatic error model correction, rejection accumulation and mosaicity refinement.
    Downloads: 0 This Week
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  • 14
    The Automatic Model Optimization Reference Implementation, AMORI, is a framework that integrates the modelling and the optimization processes by providing a plug-in interface for both. A genetic algorithm and Markov simulations are currently implemented.
    Downloads: 0 This Week
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  • 15
    ADOL-Py is a python extension to the ADOL-C automatic differentiation library.
    Downloads: 0 This Week
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