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JReferences is a tool to store and retrieve bibliographic references from a file or MySQL database.
It reads BibTeXML, DocBook XML and RIS type references, and can output these and BibTex.
A bibtex like alternative is also provided for DocBook XML docu
This is a slide rule emulator based on the classic Pickett slide rule design. It is written in Python, so the name "pyckett" is appropriate. It is suitable as an example of object-oriented Python software construction, including multiple inheritance.
A TextMap module for Python.
The TextMap class can be used to emulate oldfashioned computer screens. It will have methods like writexy(x,y,text),
input = readxy(x,y,text), clear(), scroll(x,y),
change(coloroptions), settext(text), input = gettext()
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A python library for handling and analyzing biological sequence annotations as described in GFF files (General Feature Format). The library is intended to be a complete framework for this file format.
Port of Numerical Python to Jython (Java Python) to support all mathematical operations (linear algebra, matrices, DSP, wavelets, FFT, arrays...) and thus compete with commercial packages such as Matlab. It can be easily embedded in Java programs.
KPNClac is a polish notation calculator intended to inspired by the HP48 Series calculators. It handles complex numbers and will someday handle matricies. The next current development version allows user programmable functions via python.
FIDe is a software-based fault injector designed to validate Fault-Tolerant mechanisms and techniques used by applications. It was first used to measure database recovery coverage and costs, but can be used to test and validate ordinary applications.
Signal Processing and Classification Environment in Python using YAML
pySPACE is a modular software for processing of large data streams that has been specifically designed to enable distributed execution and empirical evaluation of signal processing chains. Various signal processing algorithms (so called nodes) are available within the software, from finite impulse response filters over data-dependent spatial filters (e.g. CSP, xDAWN) to established classifiers (e.g. SVM, LDA). pySPACE incorporates the concept of node and node chains of the MDP framework. Due...
This project is a python module containing functions to do with matricies. The functions allow all of the standard matrix operations plus a few extras.
Collect is a data acquisition (DAQ) program realized for the Schonland Research Centre for Nuclear Sciences of Johannesburg (South Africa). It is used to gather data from CAMAC ADCs and TDCs via a GPIB interface.
FreePM is an opensource physicians practice management / electronic medical record application.
The company providing support for FreePM nolonger exists. You may consider TORCH http://sourceforge.net/projects/op-torch/
or one of the other FOSS EMR's.
A Genetic Algorithm Training System in Python.
Gatspy provides the framework, the user provides the error
(fitness) function. Gatspy will evolve a solution that
attempts to minimize the error.
SpikeyTree infers divergence times between populations that share a common
history described by a tree. SpikeyTree assumes that the populations have
been evolving under isolation, according to the Wright-Fisher with pure drift.
SpikeyTree can use the Beta or the Beta with Spikes approximation to the allele
frequency distribution under the Wright-Fisher.
More details can be found in
Tataru et al. Inference under a Wright-Fisher model using an accurate beta approximation
If using this software in a publication, please cite the above article.
The LisBON Framework is an adaptable framework for developing new parallel Memetic Algorithms (hybrid search algorithms for efficiently solving optimisation problems).
CCPNGrid is a Plone add-on to create a web portal which intends to provide the scientific NMR community with the means to process, analyse and execute advanced 3D-structure calculation and validation software all in a straightforward and simple way.