A colorized interactive dotplot program designed for pair-wise comparisons of RNA & DNA. The original idea was from the mind of late Prof. William J. Dreyer of Caltech. The idea is to be able to see the "tapestry" of life, which comes alive with color.
A Python function library to extract EEG feature from EEG time series in standard Python and numpy data structure. Features include classical spectral analysis, entropies, fractal dimensions, DFA, inter-channel synchrony and order, etc.
ConDEnSE (Confidential Data Enabled Statistical Exploration) will be a web-based environment for statistical analysis of confidential data from various database sources, based on Plone and R, and using the Jackknife method of confidentiality protection.
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Use SASSIE to generate and manipulate large numbers of molecular structures and then calculate the SAXS, SANS, and neutron reflectivity profiles from atomistic structures. Use for intrinsically disordered proteins. We need alpha-testers and developers.
The scikits.timeseries python module provides classes and functions for manipulating, reporting, and plotting time series of various frequencies. The focus is on convenient data access while leveraging the existing functionality in numpy.
A web-based system for upoading, managing, sharing, and analyzing bioinformatic data. The system is primarily written in python, and runs on both linux and MacOs.
pyOBD-II (a.k.a. "pyobd2") is a Python library for communicating with OBD-II vehicles. Its goal is to make writing programs for vehicle diagnostics and monitoring vehicle data as easy as possible. Relies on pySerial to communicate with ELM scanners.
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Software written in Python to take oscilloscope data for a data transmit channel and a data clock as inputs, and output an eye diagram. The eye diagram helps evaluate the quality of the transmit data.
* Note: The Google Maps V2 API used by this module has been deprecated. *
For V3, consider pygeocoder: https://pypi.python.org/pypi/pygeocoder
Easy-to-use Python wrapper for the Google Maps V2 and Local Search APIs. Provides geocoding, reverse geocoding, directions, and local search.
Data processing algorithms based on the gnostical theory of uncertain data possess high robustness with respect to both outlying data and changes of their statistical characteristics.
With this Python module (based on C++ code) it is possible to create a Brain Comp. Interface (BCI) and herewith to get EEG data online and evaluate the data while receiving it. - Up to now, this tool relies on the Brain Vision Rec. as EEG software -
...This project is about developing and maintaining add-ons to the GRIB API, like language bindings or documentation.
The main GRIB API page is at http://www.ecmwf.int/products/data/software/grib_api.html
GmshMorph is a tool to be used with GMSH, the meshing program by Christophe Geuzaine and Jean-François Remacle, for oceanographic and land-based fluid dynamics modelling.
The program shapes meshes produced by GMSH to fit specified contour data.
MIVF - Medical Imaging and Visualization Factory,
is a framework for medical applications. It supplies a platform, in which image processing and 3D visualization algorithms can be employed as reusable components (functional modules or plugins).
Goldify is a set of tools that allow automated addition of links into electronic documents. Its main purpose is to allow such addition of links into documents that wish to link to the IUPAC GoldBook (http://goldbook.iupac.org).
PMML-compliant scoring engine and analytic toolkit
...The new project page is augustus.googlecode.com. New releases of the project are not currently being released to sourceforge.
Augustus is designed for statistical and data mining models and produces and consumes models with 10,000s of segments.
Versions of Augustus support PMML 3, 4.0.1, and 4.1.
The EdfExplorer Software is a plugin based architecture to transport and convert EDF files (ESRF Data File) to HDF5 (Hierarchical Data Format). It allows the exchange of an entire data acquisition folder to be manipulated by common internet free tool