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AlphaGenome
Programmatic access to the AlphaGenome model
The AlphaGenome API provides access to AlphaGenome, Google DeepMind’s unifying model for deciphering the regulatory code within DNA sequences. This repository contains client-side code, examples, and documentation to help you use the AlphaGenome API. AlphaGenome offers multimodal predictions, encompassing diverse functional outputs such as gene expression, splicing patterns, chromatin features, and contact maps. The model analyzes DNA sequences of up to 1 million base pairs in length and can... -
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robosuite
A Modular Simulation Framework and Benchmark for Robot Learning
Robosuite is a modular and extensible simulation framework for robotic manipulation tasks, built on top of MuJoCo. Developed by the ARISE Initiative, Robosuite offers a set of standardized benchmarks and customizable environments designed to advance research in robotic manipulation, control, and imitation learning. It emphasizes realistic simulations and ease of use for both single-task and multi-task learning. -
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Superstaq
Quantum software platform that is optimized across the quantum stack
This repository is the home of the Superstaq development team's open-source work. Our quantum software platform is optimized across the quantum stack and enables users to write quantum programs in Cirq or Qiskit and target a variety of quantum computers and simulators. -
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Claude Scientific Skills
A set of ready to use Agent Skills for research, science, engineering
Claude Scientific Skills is a large open source collection of ready-to-use scientific capabilities that extend AI coding agents into full research assistants. The project provides more than 170 curated skills covering domains such as genomics, drug discovery, medical imaging, physics, and advanced data analysis. Each skill bundles documentation, examples, and tool integrations so agents can reliably execute complex multi-step scientific workflows. The framework follows the open Agent Skills... -
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Cookiecutter Data Science
Project structure for doing and sharing data science work
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work. When we think about data analysis, we often think just about the resulting reports, insights, or visualizations. While these end products are generally the main event, it's easy to focus on making the products look nice and ignore the quality of the code that generates them. Because these end products are created programmatically, code quality is still important! And we're not talking... -
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Handcalcs
Python library for converting Python calculations into rendered latex
Handcalcs is a Python library that auto-renders calculation code in Jupyter notebooks or LaTeX documents with step-by-step symbolic substitution, giving output a “handwritten” feel. It supports cell magics and auto-LaTeX generation via configurable output options. -
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Manim Python
Animation engine for explanatory math videos
Manim is a Python library and animation engine designed for creating precise, programmatic mathematical visuals—famously used by 3Blue1Brown. It enables developers and educators to script animations using code and produce high-quality explanatory math videos. -
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alphageometry
AI-driven neuro-symbolic solver for high-school geometry problems
AlphaGeometry, developed by Google DeepMind, is a theorem-proving system that combines symbolic reasoning with deep learning to solve challenging geometry problems, such as those found in mathematical Olympiads. The repository provides the full implementation of DDAR (Deductive Difference and Abductive Reasoning) and AlphaGeometry, two automated geometry solvers described in the 2024 Nature paper “Solving Olympiad Geometry without Human Demonstrations.” AlphaGeometry integrates a symbolic... -
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PyQuil
A Python library for quantum programming using Quil
PyQuil is a Python library for quantum programming using Quil, the quantum instruction language developed at Rigetti Computing. PyQuil serves three main functions. PyQuil has a ton of other features, which you can learn more about in the docs. However, you can also keep reading below to get started with running your first quantum program. Without installing anything, you can quickly get started with quantum programming by exploring our interactive Jupyter Notebook tutorials and examples. To... -
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FairChem
FAIR Chemistry's library of machine learning methods for chemistry
FAIRChem is a unified library for machine learning in chemistry and materials, consolidating data, pretrained models, demos, and application code into a single, versioned toolkit. Version 2 modernizes the stack with a cleaner core package and breaking changes relative to V1, focusing on simpler installs and a stable API surface for production and research. The centerpiece models (e.g., UMA variants) plug directly into the ASE ecosystem via a FAIRChem calculator, so users can run relaxations,... -
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ROMM
A beautiful, powerful, self-hosted rom manager and player
ROMM is an Android productivity launcher replacement that focuses on giving users faster, easier access to apps, contacts, and information through intuitive gestures, smart search, and contextual suggestions. It reimagines the home screen with adaptive layouts, predictive app recommendations, and dynamic organization so that frequently used tools are always within reach. The launcher includes a powerful universal search that combs through installed apps, contacts, messages, and web results... -
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PyTensor
Python library for defining and optimizing mathematical expressions
PyTensor is a fork of Aesara, a Python library for defining, optimizing, and efficiently evaluating mathematical expressions involving multi-dimensional arrays. PyTensor is based on Theano, which has been powering large-scale computationally intensive scientific investigations since 2007. A hackable, pure-Python codebase. Extensible graph framework is suitable for rapid development of custom operators and symbolic optimizations. Implements an extensible graph transpilation framework that... -
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AlohaMini
Open-Source Dual-Arm Mobile Robot with Motorized Lift
AlohaMini is a lightweight self-hostable productivity and note-taking platform designed to help individuals organize thoughts, tasks, and knowledge in a fast, minimal interface that avoids unnecessary complexity. It combines hierarchical notebooks, rich text editing, and tagging, allowing users to structure information the way they think and refine that structure over time. The platform focuses on speed and responsiveness, with a UI that loads instantly and feels smooth even on modest... -
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Vedo
A python module for scientific analysis of 3D data
A lightweight and powerful python module for scientific analysis and visualization of 3d objects. Inspired by the vpython manifesto "3D programming for ordinary mortals", vedo makes it easy to work with 3D pointclouds, meshes and volumes, in just a few lines of code, even for less experienced programmers. vedo is based on VTK and numpy, with no other dependencies. Import meshes from VTK format, STL, Wavefront OBJ, 3DS, Dolfin-XML, Neutral, GMSH, OFF, PCD (PointCloud). Export meshes as ASCII... -
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Perceval
An open source framework for programming photonic quantum computers
An open-source framework for programming photonic quantum computers. Through a simple object-oriented Python API, Perceval provides tools for composing circuits from linear optical components, defining single-photon sources, manipulating Fock states, running simulations, reproducing published experimental papers and experimenting with a new generation of quantum algorithms. It aims to be a companion tool for developing photonic circuits – for simulating and optimizing their design, modeling... -
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Open X-Embodiment
Unified open dataset enabling cross-embodiment learning for robotics
Open X-Embodiment is a large-scale collaborative initiative led by Google DeepMind to unify robotic learning datasets into a consistent and standardized format, simplifying access and usage across the robotics research community. Its primary goal is to make all available open-source robotic data interoperable by representing them using the RLDS (Reinforcement Learning Dataset Structure) episode format. This enables seamless integration for training, evaluation, and model development across... -
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Mathematics Dataset
This dataset code generates mathematical question and answer pairs
The Mathematics Dataset, developed by Google DeepMind, is a synthetic dataset designed to evaluate and train machine learning models on mathematical reasoning and symbolic manipulation. It generates question-and-answer pairs across a wide range of mathematical topics typically found in school-level curricula, testing a model’s ability to reason about algebra, arithmetic, calculus, probability, and more. Each question is programmatically generated with structured templates to ensure clear... -
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Newton
An open-source, GPU-accelerated physics simulation engine
...The engine extends previous simulation frameworks by introducing differentiable physics capabilities, allowing it to integrate seamlessly with machine learning models and optimization pipelines. Newton supports OpenUSD for modern 3D scene representation and interoperability, making it suitable for complex simulation ecosystems. It is developed as a Linux Foundation project with contributions from major organizations like NVIDIA, Google DeepMind, and Disney Research, highlighting its relevance in cutting-edge robotics and AI development. -
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bilingual_book_maker
Make bilingual epub books Using AI translate
bilingual_book_maker is an AI-assisted translation tool for creating bilingual and multilingual versions of books and text files. It is designed to process formats such as EPUB, TXT, SRT, and PDF, then generate translated output that helps readers compare the original text with the target language. The project supports multiple AI providers and models, including OpenAI-compatible models and other translation backends through LiteLLM-style integrations. It is especially useful for public... -
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Swift Numerics
Advanced mathematical types and functions for Swift
Swift Numerics is a foundational library that extends the Swift standard library with essential numerical protocols, types, and functions needed for scientific and systems programming. It defines generic abstractions over real and complex numbers so algorithms can be written once and work across concrete floating-point types. The package includes RealModule utilities and a full Complex type with the expected arithmetic and transcendental functions, bridging a long-standing gap for numerics... -
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Amazon Braket Default Simulator
An implementation of a quantum simulator that you can run locally
The Amazon Braket Default Simulator is a Python open-source library that provides an implementation of a quantum simulator that you can run locally. You can use the simulator to test quantum tasks that you construct for the Amazon Braket SDK before you submit them to the Amazon Braket service for execution. You must have the Amazon Braket SDK installed to use the local simulator. Follow the instructions in the README for setup. If you want to contribute to the project, be sure to run unit... -
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PyTorch Geometric
Geometric deep learning extension library for PyTorch
It consists of various methods for deep learning on graphs and other irregular structures, also known as geometric deep learning, from a variety of published papers. In addition, it consists of an easy-to-use mini-batch loader for many small and single giant graphs, a large number of common benchmark datasets (based on simple interfaces to create your own), and helpful transforms, both for learning on arbitrary graphs as well as on 3D meshes or point clouds. We have outsourced a lot of... -
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BioEmu
Inference code for scalable emulation of protein equilibrium ensembles
Biomolecular Emulator (BioEmu for short) is a model that samples from the approximated equilibrium distribution of structures for a protein monomer, given its amino acid sequence. By default, unphysical structures (steric clashes or chain discontinuities) will be filtered out, so you will typically get fewer samples in the output than requested. The difference can be very large if your protein has large disordered regions, which are very likely to produce clashes. BioEmu outputs structures... -
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BioNeMo
BioNeMo Framework: For building and adapting AI models
BioNeMo is an AI-powered framework developed by NVIDIA for protein and molecular generation using deep learning models. It provides researchers and developers with tools to design, analyze, and optimize biological molecules, aiding in drug discovery and synthetic biology applications. -
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OpenFreeMap
Free and open-source map hosting solution with custom styles
OpenFreeMap is a free and open-source map hosting platform that allows developers to display customizable maps in websites and applications without relying on commercial providers. It uses OpenStreetMap data and modern vector tile technologies to deliver high-quality maps with flexible styling options. The platform can be self-hosted or accessed through a public instance, offering full control or convenience depending on user needs. It removes common barriers such as API keys, usage limits,...
