Showing 2095 open source projects for "compiler python linux"

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  • 1
    D-Tailor

    D-Tailor

    D-Tailor: automated analysis and design of DNA sequences

    Recent advances in DNA cloning and synthesis technologies afford high throughput implementation of designed sequences into living cells. However, our ability to design sequences to interrogate multifactorial biological processes and further engineer biological functions is lagging behind. DNA-Tailor (D-Tailor) is a fully extendable software framework for biological sequence analysis and multi-objective sequence design. D-Tailor permits the seamless integration of an arbitrary number of...
    Downloads: 1 This Week
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  • 2
    SCRAM

    SCRAM

    Probabilistic Risk Assessment Tool

    SCRAM is a free and open source probabilistic risk analysis tool. The tool is under development to include fault tree, event tree, common cause, and other standard analyses.
    Downloads: 13 This Week
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  • 3
    Qutranpy

    Qutranpy

    Interactive electronic quantum transport

    Interactive program to perform quantum transport calculations by means of the Landauer and scattering matrix formalism, in a two terminal geometry. The Hamiltonians of leads and scattering region can be modified, adding exchange fields, mass, spin-orbit coupling or superconductivity.
    Downloads: 0 This Week
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  • 4
    TEACUP

    TEACUP

    TCP Experiment Automation Controlled Using Python

    TEACUP automates many aspects of running TCP performance experiments in a specially-constructed physical testbed. TEACUP enables repeatable testing of different TCP algorithms over a range of emulated network path conditions, bottleneck rate limits and bottleneck queuing disciplines. TEACUP utilises a text-based configuration file to define experiments as combinations of parameters specifying desired network path and end host conditions. When multiple values are provided (e.g. for TCP...
    Downloads: 0 This Week
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    Quantum Honeycomp

    Quantum Honeycomp

    Interactive program to calculate electronic properties in graphene

    Calculate electronic properties of graphene-like systems with a user friendly interface. The code uses the tight binding approximation and it is able to stude in a 0D, 1D and 2D geometries, orbital and magnetic fields, intrinsic and extrinsic spin-orbit coupling, sublattice imbalance, and interactions at the mean field level. The most recent version can be found in https://github.com/joselado/quantum-honeycomp Example...
    Downloads: 0 This Week
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  • 6
    WireFactory Simulator

    WireFactory Simulator

    Small factory simulator for control logic test purpose

    Wire Factory Simulator (WFS) is a free software to simulate the control of a factory, mainly controlled by IEC 61499 applications. You can build your own factory and controller. The controller can be implemented on any programming language. WFS was originally built to simulate the action of an IEC 614999 application. So, the devices in the factory are easily connected to IEC 61499 applications. The WFS were mainly tested with FBDK (http://www.holobloc.com/). Wire Factory has been...
    Downloads: 2 This Week
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  • 7
    My Beaglebone Black Project
    The Beaglebone Black project presented here is a software written by Python and Qt and is intended to show the simple control of inputs and outputs (GPIO), the graphic course of input signals GPIO, the configuration and sending and receiving of data via the UART interfaces, the display of the PIN configuration of the Beaglebone Black and the graphic display of the signal course at the analog inputs. The software runs on the BBB under Debian 8.9 and on Linux computers (as a demo). ...
    Downloads: 0 This Week
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  • 8
    The Geocanvas project aims to provide a very small and simple set of APIs to assist the developer in creating geographically referenced canvas applications within the GTK/Gnome environment.
    Downloads: 0 This Week
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  • 9
    owfs and owhttpd

    owfs and owhttpd

    Project moved to https://github.com/owfs/owfs/

    Please note that OWFS source code, and all Issue/Tickets/merge requests have now been moved to https://github.com/owfs/owfs/. Developer mailing lists will still be kept at Sourceforge. ---- OWFS -- 1-Wire file system. Use the Dallas 1-Wire and iButton chips with standard filesystem commands. Create temperature loggers. Monitor everything. OWHTTPD -- same system, only used as a light weight web server. OWFS is also ported to embedded routers, Mac OSX and Windows. Basically you can use...
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    Downloads: 9 This Week
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  • 10

    PyUltimateRobot

    Controls any Robot in Python

    Developed on Python to leverage state-of-the-art extensibility and easily integrated plugins Able to use low cost robots with the accuracy and dexterity of much more expensive robots, achieved in part by: a) Ability to drive movement by inexpensive DC gear head motors, including the inherent ability to specify movement by applied force rather than strict space/time control that steppers impose. b) Arms and linkages don't have to have super tight tolerances, because accuracy is...
    Downloads: 0 This Week
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  • 11

    PPLine

    SNP calling, annotation and gene/transcripts expression quantification

    PPLine is a Python-based suite aimed to process raw RNA-seq or Exome-seq data. PPLine provides: - read mapping (STAR/Tophat2/bowtie/bowtie2), including novel splice junsctions discovery - gene and transcript expression estimation (HTSeq-count/Cufflinks) - SNP calling with BQSR and indel realignment (samtools/GATK) - variant annotation (Annovar) - novel transcripts discovery (Cufflinks) - predicting proteotypic peptides and creating ref/alt proteins fasta-database - integration of...
    Downloads: 0 This Week
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  • 12

    PyMathProg

    An easy and flexible mathematical programming environment for Python.

    PyMathProg is a Python reincarnation of AMPL and GNU MathProg modeling language, implemented in pure Python, connecting to GLPK via swiglpk. Create, optimize, report, change and re-optimize your model with Python, easily integrate database, plotting, etc.
    Downloads: 0 This Week
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  • 13

    Construct2D

    COmputational fluid dyNamics STRUctured grid CreaTor for 2D airfoils

    Construct2D is a grid generator designed to create 2D grids for CFD computations on airfoils. The grids are generated in Plot3D format. The only required input file is the set of coordinates defining the airfoil geometry, using the same format as XFoil, the popular vortex-panel code for airfoil analysis. Construct2D can create grids with O topology (recommended for airfoils with a blunt trailing edge) or C topology (recommended for airfoils with a sharp trailing edge). Now available in...
    Downloads: 18 This Week
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  • 14

    IPS Framework

    A simple Python framework for loosely-coupled multiphysics simulations

    The IPS Framework has migrated to https://github.com/HPC-SimTools/IPS-framework The IPS framework was developed to support loosely-coupled integrated modeling of fusion plasmas (and was originally the Integrated Plasma Simulator). However, the design is quite general, and is suitable for many scientific and engineering domains. In addition to plasma physics, it is also being used in the engineering of batteries. One of the novel features of the IPS framework is its...
    Downloads: 0 This Week
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  • 15

    Inelastica

    Transport code and tools based on SIESTA and TranSIESTA (DFT-NEGF)

    NOTE: The Inelastica project moved to https://github.com/tfrederiksen/inelastica/ in February 2018. Pre- and post-processing tools for SIESTA (DFT, quantum chemistry) and TranSIESTA (quantum transport): (1) Calculate phonon frequencies, e-ph couplings, and inelastic contributions to the conductance (IETS). (2) Access Hamiltonian etc from Python. Some code documentation and installation instructions are available at this mediawiki page: http://dipc.ehu.es/frederiksen/inelastica/index.php.
    Downloads: 0 This Week
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  • 16

    lr2rmats

    Long read to rMATS

    lr2rmats is a Snakemake-based light-weight pipeline which is designed to utilize both third-generation long-read and second-generation short-read RNA-seq data to generate an enhanced gene annotation file. The newly generated annotation file could be provided to rMATS for differential alternative splicing analysis. More information can be found at https://sourceforge.net/p/lr2rmats/wiki/Home/
    Downloads: 0 This Week
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  • 17

    DualTranscriptDiscovery

    Transcript-discovery approach for gene feature delimitation by RNA-seq

    This project contains Python scripts usable for a dual transcript-discovery approach that improves the delimitation of gene features from RNA-seq data in the chicken model. Documentation: http://bio.biologists.org/content/biolopen/suppl/2018/01/17/bio.028498.DC1/BIO028498supp.pdf Citation: Orgeur M., Martens M., Börno S. T., Timmermann B., Duprez D. and Stricker S. (2018). A dual transcript-discovery approach to improve the delimitation of gene features from RNA-seq data in the...
    Downloads: 1 This Week
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  • 18
    Acoustic Research Tool (ART)

    Acoustic Research Tool (ART)

    Acoustic Simulation Library for Frequency and Time Domain Simulations.

    ART is a flexible simulation framework for wind instruments. It includes a growing library of modelling elements. So far bore discontinuities, branches, tone holes, cylindrical and conical tubes, Bessel horns and bent tubes are available for frequency domain modelling. In the time domain generic bidirectional propagation elements, scattering elements, fractional delays, convolution with reflection functions and general z-domain networks are available and can be described using MuParserX...
    Downloads: 2 This Week
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  • 19
    Mixture100

    Mixture100

    Simply percent calculator

    For making various mixtures, like homemade alcohol, brine or e-liquids. Add a components, set a percentage in total, set how much I want a given mixture and save, share or print recipe.
    Downloads: 0 This Week
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  • 20

    TekDS820

    Drive your obsolete Tek oscilloscope remotely with python

    Control a Tek TDS-820 remotely via a GPIB interface using linux-gpib, python, matplotlib and tkinter. The programming manual is used to generate an XML schema which is then used to assist in building extra functionality into the tkinter user interface.
    Downloads: 0 This Week
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  • 21
    ABC-SysBio implements likelihood free parameter inference and model selection in dynamical systems. It is designed to work with both stochastic and deterministic models written in Systems Biology Markup Language (SBML).
    Downloads: 0 This Week
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  • 22
    Morinus

    Morinus

    Exquisite Astrology Software

    Astrology software for all.
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    Downloads: 30 This Week
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  • 23
    SciPy: Scientific Library for Python
    NOTE: the project has moved to https://scipy.org/scipylib/ --- go there to find latest versions. This sourceforge project contains only old historical versions of the software. SciPy is package of tools for science and engineering for Python. It includes modules for statistics, optimization, integration, linear algebra, Fourier transforms, signal and image processing, ODE solvers, and more.
    Downloads: 14 This Week
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  • 24
    pyCGNS

    pyCGNS

    A Python package for CGNS

    pyCGNS is now on github: https://pycgns.github.io/index.html https://github.com/pyCGNS/pyCGNS
    Downloads: 0 This Week
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  • 25
    multiplierz
    Open-source Python software library and GUI desktop environment for direct bioinformatic analysis of mass-spectrometry data through powerful scripting tools and interfaces to many machine data formats, database search engines, and peptide data formats. For a copy of the source code, check out our Github repositories: mzDesktop: https://github.com/MaxAlex/mzDesktop multiplierz: https://github.com/MaxAlex/multiplierz
    Downloads: 0 This Week
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