Showing 2171 open source projects for "python source"

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  • 1

    Safe Harbor Deidentification

    Safe Harbor Deidentification for medical documents

    Phalanx - Deidentify Safe Harbor Deidentification Mode of Phalanx is an abridged pipeline of NLP annotators culminating in NER annotators which write output of text offsets. It uses the Safe Harbor deidentification method.
    Downloads: 0 This Week
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  • 2

    slurm-roll

    Slurm Resource Manager for Rocks Clusters

    Slurm is a replacement for other resource management software and schedulers like gridengine or torque. The slurm roll integrates very well into a rocks clusters installation. In the folder addons, there are a lot of useful rolls for rocks clusters 6.1 and 6.2. These rolls do not depend on slurm. Please see Discussion for further information and support
    Downloads: 0 This Week
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  • 3

    ParamIT

    a Toolset for Molecular Mechanical Force Field Parameterization

    ParamIT is a toolkit aiding the development of molecular mechanical force field parameterization of small, drag like, molecules within CHARMM general force field (CGenFF) protocol. The developed toolkit helps the researchers in following ways: 1) automating the creation of multiple input files for quantum and molecular mechanics programs, 2) automating the output analysis and 3) substitute the use of full MM programs with a faster specialized one. The developed tools include: 1) generator of...
    Downloads: 0 This Week
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  • 4
    GEOMS2

    GEOMS2

    Geostatistics and geosciences modeling software

    GEOMS2 is a geostatistics and geosciences modeling software. Provides interface for grid (mesh), point, surface and data (non-spatial) objects. It has a 3D viewer and 2D plots using the well known Python engines Mayavi and Matplotlib. It has several functions to manipulate your data as well as provide univariate and multivariate analysis. NOTE: The software is still an early beta. Please tell us if you found a bug. Download datasets for students of Geostatistics 2017 (Petroleum...
    Downloads: 3 This Week
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  • 5
    Gis Weather
    Customizable weather widget
    Downloads: 30 This Week
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  • 6
    pyfolio

    pyfolio

    Portfolio and risk analytics in Python

    pyfolio is a Python library for performance and risk analysis of financial portfolios developed by Quantopian Inc. It works well with the Zipline open source backtesting library. At the core of pyfolio is a so-called tear sheet that consists of various individual plots that provide a comprehensive image of the performance of a trading algorithm. Here's an example of a simple tear sheet analyzing a strategy.
    Downloads: 0 This Week
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  • 7
    LaueTools

    LaueTools

    open source python packages for X-ray MicroLaue Diffraction analysis

    LaueTools is an open-source project for white beam Laue x-ray microdiffraction data analysis including tools in image processing, peaks searching & indexing, crystal structure solving (orientation & strain) and data & grain mapping visualisation. Python 3 Code and new features are now at: https://gitlab.esrf.fr/micha/lauetools
    Downloads: 1 This Week
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  • 8
    CMD Plot Tool

    CMD Plot Tool

    Calculates and plots Colour Magnitude Diagrams from Astronomical data

    ...It can handle multiple file formats (plain text, DAOPHOT .mag files, ACS Survey of Galactic Globular Clusters .zpt files) to generate professional and customised plots, without the usual steep learning curve. Development using Python, OOP and a formal software development lifecycle model (Agile) allowed for the creation of an application that can be deployed on multiple systems. It works “out of the box” and does not require any installation of development environments, additional libraries or resetting of system paths. The tool is available as a single application/executable file, with the source code, on Sourceforge. ...
    Downloads: 0 This Week
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  • 9
    pyGear

    pyGear

    Precise gear geometry generator for spur and helical gears

    A python gear generator that serves as CAE/CAD-preprocessor for involute gears based on pythonOCC. It allows for the computation of dynamic properties and the creation of exact geometries from a minimal input set. PyGear can simulate the tool geometry and kinematics of standard gear hobbing tools to generate precise flank, tooth root and tip geometries.
    Downloads: 2 This Week
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  • 10
    CutePy

    CutePy

    Lightweight Qt-based Python console with variable explorer and history

    CutePy is a lightweight Qt-based Python 3 console with variable explorer, command history, syntax highlighting and customizable startup script. Originally it was developed for simple scientific calculations as a replacement for e.g. Windows calculator or Python IDLE. Therefore its main aim is to start fast and provide more comfortable dealing with variables based on the Python language. However in the end it is a regular Python console and therefore can be used for almost any task.
    Downloads: 0 This Week
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  • 11

    Ljudmiljö i Stationssamhällen

    Simulering av åtgärder mot buller från järnväg

    En demonstrator av ett verktyg som simulerar åtgärder mot buller från järnväg. Demonstratorn är utvecklad inom projektet "God ljudmiljö i stationssamhällen - Verktygslåda och exempel till nytta för klimat, hälsa och resurseffektivitet" som bedrevs inom ramen för MISTRA Urban Futures med finansiering från programkontoret inom det strategiska innovationsprogrammet InfraSweden2030 genom Vinnova, samt från Västra Götalands regionen och Trafikverket. Projektet utfördes av RISE, Chalmers och VTI...
    Downloads: 0 This Week
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  • 12
    Xplico

    Xplico

    Xplico is a Network Forensic Analysis Tool (NFAT)

    Xplico is a Network Forensic Analysis Tool (NFAT). The goal of Xplico is extract from an internet traffic capture the applications data contained. For example, from a pcap file Xplico extracts each email (POP, IMAP, and SMTP protocols), all HTTP contents, each VoIP call (SIP, MGCP, MEGACO, RTP), IRC, WhatsApp... Xplico is able to classify more than 140 (application) protocols. Xplico cam be used as sniffer-decoder if used in "live mode" or in conjunction with netsniff-ng. Xplico is used...
    Downloads: 14 This Week
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  • 13

    reditools

    RNA editing detection by NGS data

    REDItools are python scripts developed with the aim to study RNA editing at genomic scale by next generation sequencing data. RNA editing is a post-transcriptional phenomenon involving the insertion/deletion or substitution of specific bases in precise RNA localizations. In human, RNA editing occurs by deamination of cytosine to uridine (C-to-U) or mostly by the adenosine to inosine (A-to-I) conversion through ADAR enzymes. A-to-I substitutions may have profound functional consequences and...
    Downloads: 3 This Week
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  • 14

    Stationsnara

    Simulering av åtgärder mot buller från järnväg

    En demonstratar av ett verktyg som simulerar åtgärder mot buller från järnväg.
    Downloads: 0 This Week
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  • 15
    plot.py

    plot.py

    direct data plotting and evaluation

    The Plot.py project tries to supply a measurement data visualization and treatment framework being easy to use while keeping the freedom for advanced users to execute additional data treatment algorithms. Plotting is done via gnuplot and the script used to produce the graphs can be exported for later use/changes. Many raw experimental data types (mostly of x-ray and neutron scattering experiments) are supported with more to be added on user request. The data treatment includes...
    Downloads: 0 This Week
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  • 16
    CHLone

    CHLone

    CGNS/HDF5 compliant library

    CHLone is a CGNS/SIDS compliant mapping on HDF5. You can read/write CGNS/HDF5 files and access to node through a C API interface or using a Python module.
    Downloads: 0 This Week
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  • 17
    This is a Python-based efficient implementation of several semantic similarity measures. The target is to enable fast and easy calculation of similarity between proteins and genes using the Gene Ontology (GO).
    Downloads: 0 This Week
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  • 18

    Arabic Corpus

    Text categorization, arabic language processing, language modeling

    The Arabic Corpus {compiled by Dr. Mourad Abbas ( http://sites.google.com/site/mouradabbas9/corpora ) The corpus Khaleej-2004 contains 5690 documents. It is divided to 4 topics (categories). The corpus Watan-2004 contains 20291 documents organized in 6 topics (categories). Researchers who use these two corpora would mention the two main references: (1) For Watan-2004 corpus ---------------------- M. Abbas, K. Smaili, D. Berkani, (2011) Evaluation of Topic Identification Methods on...
    Downloads: 3 This Week
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  • 19

    GCB_package

    Stand-alone version of the Genome Complexity Browser

    This application allows observing genome rearrangements in prokaryotic genomes. It provides rearrangements frequencies profiles and genomes graph representation.
    Downloads: 0 This Week
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  • 20
    e-Species

    e-Species

    A taxonomically intelligent biodiversity search engine

    This is a pure Python CGI-based implementation of a taxonomically intelligent species search engine. It searches biological databases for a taxonomic name. The search is done "on the fly" using web services (SOAP/XML) or URL API's.
    Downloads: 0 This Week
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  • 21
    Virtual Laboratory Environment

    Virtual Laboratory Environment

    A multi-modeling and simulation environment to study complex systems

    VLE is a multi-modeling and simulation environment to study complex dynamic systems. VLE is based on the discrete event specification DEVS. and it implements the DSDE formalism (A merge of Dynamic Structure DEVS, DSDEVS, with Parallel DEVS, PDEVS). VLE provides a complete set of C++ libraries, called VFL (VLE Foundation Libraries), to develop DEVS models, to gets results of simulations, to launch simulation on cluster. The models can be developed with the DEVS formalism or with the classical...
    Downloads: 0 This Week
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  • 22

    TimingDrawer

    Text based timing diagram generator

    This tool generates timing diagrams for documenting hardware design. It reads the description from a text file with a simple syntax. It generates vector graphic (EPS, SVG or EMF format). It can be used in command line mode or with a GUI. It is written in Python and works on any platform.
    Downloads: 0 This Week
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  • 23

    wxPi

    A simple local weather recorder for Raspberry Pi ZeroW

    An expandable networked weather recorder hosted on Raspberry Pi ZeroW, with associated sensor hardware.
    Downloads: 1 This Week
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  • 24
    Nelder Plot Designer

    Nelder Plot Designer

    A Computer-aided Tool for Nelder Plot Design

    Nelder plot (Nelder 1962) is an experimental design for testing a multiple tree spacings in a single plot. The shape of plot is circular with some number of concentric wheels or arcs radiating outward and the spokes connecting the center. The intersections of spokes and arcs are the tree positions. The tree position on different wheels represent a different the tree spacing distance or tree density. This design eliminates the need for separate experimental plots for each tree density. The...
    Downloads: 0 This Week
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  • 25

    CRP - Chemical Reaction Prediction

    Predicting Organic Reactions using Neural Networks.

    The intend is to solve the forward-reaction prediction problem, where the reactants are known and the interest is in generating the reaction products using Deep learning. This Graphical User Interface takes simplified molecular-input line-entry system (SMILES) as an input and generates the product SMILE & molecule. Beam search is used in Version 2, to generate top 5 predictions. Maximum input length for the model is 15 (excluding spaces).
    Downloads: 0 This Week
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