Search Results for "research" - Page 15
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Showing 1461 open source projects for "research"
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PyCosmic is a tool to detect and clean single images from the disturbing cosmic ray hits. It was designed and tested specifically for CALIFA and other fiber-fed integral-field spectroscopy dataset. It is written in Python and can be executed from the command line. New release is version v0.5. Updated to be compatible with numpy version 1.12. New release is version v0.4. It's now compatible with astropy for fits I/O and computation time is reduced by a factor of 2.
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CircularLogo is a light-weighted, easy to use web application that visualizes the intra-motif dependencies of a DNA or RNA motif.
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This is a repository for software that is needed to communicate with the data loggers of CORK borehole observatories (mlterm) and to convert and post-process the data. Have a look at http://www.corkobservatories.org/ for an introduction to CORKs.
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MoCObench
Benchmark instances for multiobjective combinatorial optimization
Benchmark instances for multiobjective combinatorial optimization -
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KAPPA (Key Aminoacid Pattern-based Protein Analyzer) is a sequence search program dedicated to the discovery and clustering of proteins defined by a key aminoacid pattern.
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Stochastic simulator for signaling pathways occuring in biological cells. Handles reaction-diffusion processes in 3D tetrahedral meshes. Please check our new repository: https://github.com/CNS-OIST/STEPS
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ChiantiPy is a Python package for the CHIANTI atomic database for astrophysical spectroscopy. It provides access to the database and the ability to calculate various physical quantities for the interpretation of astrophysical spectra.
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The Acids and Bases chapters' (14 and 15) calculations are arguably the hardest calculations in all of AP Chemistry. With some problems taking as long as ten minutes to solve, the can be hard to wrap the mind around. However, with the Acids and Bases Program, a quick answer is never more than a click away.
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NICOS
Client/Server based experiment and instrument control system
Client/Server based experiment and instrument control system -
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PyMeG - Python Measurement GUI
Make your complex measurements in an easy graphical way
Inspired by the THz-Shaker (https://sourceforge.net/projects/hzdr/) PyMeG can be a more general and well structured framework as well as Graphical User Interface for measurements in several laboratories. -
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PBSuite
Software for Long-Read Sequencing Data from PacBio
This currently hosts two projects created and maintained by Adam English. PBJelly - the genome upgrading tool. PBHoney - the structural variation discovery tool Both are contained within the PBSuite code found in downloads. ----- PBJelly ----- Read The Paper http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0047768 PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in fasta format) to... -
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Gene-Environment iNteraction Simulator 2
A tool able to simulate gene-environment and gene-gene interactions.
Gene-Environment iNteraction Simulator 2 (GENS2) simulates interactions among two genetic and one environmental factor and also allows for epistatic interactions. GENS2 is based on data with realistic patterns of linkage disequilibrium, and imposes no limitations either on the number of individuals to be simulated or on number of non-predisposing genetic/environmental factors to be considered. The GENS2 tool is able to simulate gene-environment and gene-gene interactions. To make the... -
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AirTSP
Simulated Airline Travel Solution Provider Library
AirTSP is also named AirTSP (TSP standing for Travel Service Provider). That project aims at providing a clean API and a simple implementation, as a C++ library, of an Airline Schedule Management System. It is intended to be used in simulated environments only: it is not designed to work in the real-world of Airline IT operations. AirTSP/AirTSP makes an extensive use of existing open-source libraries for increased functionality, speed and accuracy. In particular the Boost (C++... -
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Cambridge Rocketry Simulator
Simulate high power rocket flights with splash down plots
...Running in Monte Carlo mode allows generates multiple possible flight paths and splash down plots, indicating the probability of landing in an area. Peer-reviewed publication in the Journal of Open Research Software (JORS) http://doi.org/10.5334/jors.137 "Cambridge Rocketry Simulator – A Stochastic Six-Degrees-of-Freedom Rocket Flight Simulator" -
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poliqarp2
natural language corpora search engine
This project aims at building an efficient indexer and search engine for natural language corpora with multilevel annotations. -
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SCons gnuplot tool
SCons tool to cooperate with gnuplot program
SCons is a make replacement providing a range of enhanced features such as automated dependency generation and built in compilation cache support. SCons rule sets are Python scripts so as well as the features it provides itself SCons allows you to use the full power of Python to control compilation. This package is an extension (tool) to SCons, which enables "compilation" of gnuplot scripts in SCons-based projects. The intended audience include (but is not limited to) authors/publishers... -
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BiBler
Tool to manage and manipulate BibTeX entries
BiBler is a software for managing references to scientific articles using BibTeX. BiBler runs with a windows GUI or can be used as a Python library -
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Regina
Software for 3-manifold topology and normal surface theory
A suite of mathematical software for 3-manifold topologists, focusing on the study of 3-manifold triangulations, normal surfaces and angle structures. -
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Geophar
Le couteau suisse du prof de maths
Calculatrice graphique avancée en français, destinée aux professeurs ou aux étudiants du collège et du lycée. Elle permet de faire du calcul approché, de tracer des courbes et des figures géométriques exportables en png, eps, pdf ou svg. Linux, Windows, Mac. Elle contient également un outil pour générer très facilement des tableaux de variations et de signes en LaTeX. -
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Taurus
A python based User Interface library.
The Taurus Project has *moved* to: https://github.com/taurus-org/taurus This SourceForge page is *outdated* and kept for historical reference only. Taurus is a python framework for control and data acquisition CLIs and GUIs in scientific/industrial environments. It supports multiple control systems or data sources: Tango, EPICS, ... New control system libraries and data sources can be integrated through plugins. -
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pyLuminous
python modules for modelling some optical systems.
This project is a collection of python modules for modelling various optical systems. It presently consists of pyFresnel and pyQW. pyFresnel models optical properties of dielectric layers and includes a thin film model (unlike the many other codes out there this can also handle uniaxial layers as long as the optical axis is aligned with the stack growth direction). pyQW models very simple (n-doped) quantum well structures and their intersubband transitions. -
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pybrn is a Python package for the analysis of biochemical reaction networks. It provides basic model handling capabilities, import from SBML, analysis of conservation relations, steady state computation and model simulation.
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This project houses software to analyze data acquired from electrophysiology experiments. Currently, we have an Octave/MATLAB program to analyze electroneurogram traces of coupled oscillators, and a Perl library for the analysis of voltage trace data
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P3BSseq
Parallel processing pipeline for analysis of bisulfite sequencing data
Bisulfite sequencing (BSseq) processing is among the most cumbersome next generation sequencing (NGS) applications. Though some BSseq processing tools are available, they are scattered, require puzzling parameters and are running-time and memory-usage demanding. We have developed P3BSseq, a parallel processing pipeline for fast, accurate and automatic analysis of BSseq reads that trims, aligns, annotates, records the intermediate results, performs bisulfite conversion quality assessment,...
