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This Python 3.1 tool manipulates the coordinate system of CNC GCODE for machining or engraving. It can Flip X, Y, or Z coordinates, mirror X, Y, or Z coordinates, flip or Mirror both XY coordinates, or insert Z motions into a GCODE file devoid of them.
RADAR stands for Rapid Automatic Detection and Alignment of Repeats in protein sequences. RADAR identifies gapped approximate repeats and complex repeat architectures involving many different types of repeats.
Radar has moved to github (https://github.com/AndreasHeger/radar)
BARNACLE is a Python library for RNA 3D structure prediction. It can be used for probabilistic sampling of RNA structures that are compatible with a given nucleotide sequence and that are RNA like on a local length scale.
A cross-platform library that computes fast and accurate SIFT image features. libsiftfast provides Octave/Matlab scripts, a commandline interface, and a python interface (siftfastpy). Optimized with SIMD instructions and OpenMP .
The aim of project is creating program environment for solving some integral equations, arising at solving mathematical problems of the diffraction theory.
pyOBD-II (a.k.a. "pyobd2") is a Python library for communicating with OBD-II vehicles. Its goal is to make writing programs for vehicle diagnostics and monitoring vehicle data as easy as possible. Relies on pySerial to communicate with ELM scanners.
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Tandem mass spectral peptide identification and validation software, similar to X!Tandem, OMSSA, MyriMatch. Suitable for single hosts through large clusters. Written in Python for simplicity, with performance-critical sections in C++.
This project implements an algorithm for segmenting protein sequences into smaller meaningful blocks. The method is based on the pure statistical approach and it uses an analogy between proteins and natural language.
CitySpeed is a Python package that uses online mapping services to gather statistics on the efficiency and complexity of road networks. This can be used to create maps showing how fast you can drive around a particular city.
Tools to perform metabolic control analyses on biochemical network models in SBML format. Allows computation of first and second order response coefficients, elasticities, first order control coefficients and first order spectral response coefficients.
Add-ons to the ECMWF GRIB API.
This project is about developing and maintaining add-ons to the GRIB API, like language bindings or documentation.
The main GRIB API page is at http://www.ecmwf.int/products/data/software/grib_api.html
GmshMorph is a tool to be used with GMSH, the meshing program by Christophe Geuzaine and Jean-François Remacle, for oceanographic and land-based fluid dynamics modelling.
The program shapes meshes produced by GMSH to fit specified contour data.
This program is a User Interface to run command-line applications in any python-enabled system.
Batch execution is available for files in a folder or in subfolders.
The Felo rating system provides an objective fencing strength estimate for each individual fencer in a group, just like the Elo rating in chess. This program calculates the Felo numbers by analysing a bout result list created by the user.
Version 0.2 of orphaned pyLAS from google code repository. Now written as both a commandline executeable and as a python class for extension/intergration with other projects.
P2TK, the Penn Phonetics Toolkit, developed in the University of Pennsylvania Linguistics Department Phonetics Lab, is a collection of Python scripts and other tools to aid speech research.