Showing 478 open source projects for "windows command line"

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  • 1

    Arachne

    Exploration of a Hierarchical+Functional Approach To Data Organization

    This is dedicated to development of a small class for organizing data in both a traditional parent<->child hierarchy and by the functions used to generate child data nodes from parent data. The core of the project is in the class definitions contained within arachne.py, a demonstration of how this method of arranging data can be used to solve a relatively interesting problem may be found in test.py
    Downloads: 0 This Week
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  • 2
    CoNIFER

    CoNIFER

    Homepage for CoNIFER (Copy Number Inference From Exome Reads)

    CoNIFER uses exome sequencing data to find copy number variants (CNVs) and genotype the copy-number of duplicated genes.
    Downloads: 4 This Week
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  • 3

    colonyzer image analysis software

    Image analysis estimating cell density in arrayed microbial cultures

    Image analysis software for quantification of cell density in microbial cultures (e.g. S. cerevisiae) growing on solid agar plates. Specialises in detection of extremely low cell densities. Forms part of the Quantitative Fitness Analysis (QFA) workflow: http://research.ncl.ac.uk/qfa/ Suitable for high-throughput, genome-wide analysis of culture libraries when combined with the following qfa R package: http://qfa.r-forge.r-project.org/ This is the version presented, used and...
    Downloads: 0 This Week
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  • 4

    WebSynonymExtractor

    a synonym extractor based on web-corpora and a multilingual translator

    This project is an approach for synonym extraction and extending WordNet by the so found synonyms. The python application is realised as a kind of pipe that starts with a web-corpus-reader which is followed by several workers (tokenizers, lemmatizers, ...) and finally completed by a result writer. In contrast to the state of the art approaches, this implementation is based on single words found in the web used as a corpus and translated to other languages. If translations of different...
    Downloads: 0 This Week
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  • 5
    Prediction of MHC class I- and MHC class II-restricted T-cell epitopes. Prediction of proteasomal/immunoproteasomal processing of antigens. Prediction of peptide-TAP binding.
    Downloads: 0 This Week
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  • 6

    ProSym

    Software package that facilitates traffic simulation

    Downloads: 0 This Week
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  • 7

    Pysimony

    A Pythonic Implementation of Parsimony Inference of Phylogeny

    UPDATE: After some bug fixes, I've ditched Pysimony for Javamony: https://sourceforge.net/projects/javamony/ Given Python's beauty, I know that someday I will have to finish Pysimony. A student's first attempt at a phylogenetic inference program, written in the simplistic yet elegant Python. Pysimony reads a FASTA file (only ATGC accepted) specified as its only argument. Basic testing has shown that it is slow, inaccurate and most definitely inefficient. An...
    Downloads: 0 This Week
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  • 8
    GemSIM is a software package for generating realistic simulated next-generation sequencing reads with quality score values. Both Illumina and Roche/454 reads (single or paired end) can be simulated using appropriate empirical error models.
    Downloads: 3 This Week
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  • 9
    Mathemapy

    Mathemapy

    A Python calculator program

    Mathemapy is a feature-rich calculator made in Python. It can do multiple types of division, solve equations, expand equations and more.
    Downloads: 0 This Week
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  • 10
    JBoost is a simple, robust system for classification. JBoost contains implementations of several boosting algorithms in an alternating decision tree framework. In addition, JBoost provides extensible software for adding more learning algorithms.
    Downloads: 0 This Week
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  • 11

    brocc

    BLAST Read and OTU Consensus Classifier

    NOW HOSTED ON GITHUB: https://github.com/kylebittinger/brocc Old releases are kept here for archival purposes.
    Downloads: 0 This Week
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  • 12

    QUASR

    Cross-platform NGS processing and analysis pipeline in Python

    QUASR is a lightweight pipeline written to process and analyse next-generation sequencing (NGS) data from Illumina, 454, and Ion Torrent platforms. Although originally written for viral data, it is generic enough to work on any NGS dataset. Functions include: duplicate removal demultiplexing primer-removal quality-assurance (QA) graphing quality control (QC) consensus-generation minority-variant determination minority-variant graphing The main current version is 6.X, which is...
    Downloads: 0 This Week
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  • 13
    Compilation of Physics Calculators

    Compilation of Physics Calculators

    A compliation of Physics derived claculators

    A NEW GUI VERSION WILL BE RELEASED SOON! Thank you for visiting the Physics Calculator, provided by PIezoSystems Inc., please visit their company website at https://piezosystems.org. For other downloads, please visit our github page, https://github.com/PiezoSystems. We hope that you find this program useful and easy to use, for troubleshooting, please email us, contact@piezosystems.org. If any bugs were found, please email us at bugs@piezosystems.org.
    Downloads: 0 This Week
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  • 14
    PyPedal is a Python module that provides tools for the manipulation of pedigrees, simple visualization of pedigrees, and the calculation of measures of genetic diversity from pedigrees.
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    Downloads: 1 This Week
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  • 15
    QDC (quick direct-method controlled) is an optimized exact implementation of the Gillespie's direct-method. It is designed for biochemical simulations when there is the need of dynamic parameters whose values can change during the simulation.
    Downloads: 0 This Week
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  • 16

    wt210tocsv

    Converts Yokogawa WT210 output to easily chartable CSV format

    The Yokogawa WT210 outputs a CSV file through its GPIB-USB interface. The CSV is not easily chartable in Excel/Libreoffice. This will parse the CSV in a way that makes it more easily charted.
    Downloads: 0 This Week
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  • 17
    proper
    Command-line tool to calculate error propagation. Generates the error formulas and applies them to the data.
    Downloads: 0 This Week
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  • 18
    VERTIS Virtual Scanner

    VERTIS Virtual Scanner

    A virtual scanner for 3D models.

    A virtual scanner that converts 3D models (in Wavefront .obj format) into pointcloud files (in PCL .pcd format). Useful for simulating robotic input. NOTE: This project has been merged into the project at https://github.com/canderegg/cfg_obj
    Downloads: 0 This Week
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  • 19

    totaldepth

    Petrophysical data processing and presentation.

    TotalDepth is an Open Source, cross platform, software collection that can process petrophysical data from the oil field such as wireline logs, seismic data and so on. Conventional, proprietary, software for petrophysical data tends to be expensive to licence, restrictive, slow to develop for and tied to expensive hardware. TotalDepth changes all of that. TotalDepth is open and cross-platform, and produces results straight to the bowser. TotalDepth supports such technologies such as...
    Downloads: 1 This Week
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  • 20
    CAD Scripts project is designed to automate the work of CAD Softwares. Here you will find scripts/softwares which help to do tasks easily. E.g- Specify coordinates of figures in input file and get output dxf file without actually drawing anything.
    Downloads: 1 This Week
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  • 21
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  • 22
    A command line based weather reporting tool written in python. View current weather conditions, extended day forecasts, and station id lookups as reported from weather.com. Customize output via weathergetrc configuration file. Platform independent.
    Downloads: 0 This Week
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  • 23
    A set of Unix command line tools for quick and convenient batch processing of tabular text files (a.k.a., tab-delimited, csv, or flat file format) with a header line. Provides delimiter and compression detection, column reference by name. * tblmap: per-line ("map") computation: derive columns through an expression, delete, reorder, filter rows. * tblred: compute ("reduce") aggregations (e.g., sum, average) over groups defined by key columns
    Downloads: 0 This Week
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  • 24
    The RDXplorer is a computational tool for copy number variants (CNV) detection in whole human genome sequence data using read depth (RD) coverage. CNV detection is based on the Event-Wise Testing (EWT) algorithm recently published by our group.
    Downloads: 0 This Week
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  • 25
    Pink is an image processing library developed at ESIEE Engineering for research and teaching purposes. It contains implementations of over 200 algorithms for image segmentation and filtering.
    Downloads: 0 This Week
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