Showing 481 open source projects for "data science"

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  • 1
    PyPak is a Python library for communication with Campbell Scientific dataloggers through the PakBus interface over TCP/IP or serial lines.
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  • 2
    ParaSim

    ParaSim

    Parallelized calculation of molecular similarities

    Diversity assessments and comparisons of large compound databases require calculating similarities of millions of compounds in an affordable time. ParaSim addresses this challenge by parallelizing the calculations according to the number of computing cores available on a single machine. It is optimized for the throughput of very large numbers of query structures against very large numbers of reference structures. As as special feature, ParaSim allows to store and and to access frequently...
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  • 3

    Webapp

    A web interface to the SnowyOwl gene prediction pipeline

    Downloads: 0 This Week
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  • 4
    Math tools in Python to tackle down problems in Operational Research fields. Comes with a Django based web interface to allow remote access to complex simulation means.
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  • 5
    A High-Order Multi-Variate Approximation Scheme for Arbitrary Data Sets, C implementation of the method described in http://web.mit.edu/qiqi/www/paper/interpolation.pdf, with Python and Fortran interfaces.
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  • 6

    hrefinder

    Detection of homologous recombination events from SNP data

    This software detects homologous recombination events (HREs) from SNP data. Based on SNP alleles calls and locations, it breaks the genomes into locally colinear blocks, and looks for cases where SNPs do not agree with the vertical pattern of inheritance in a phylogeny. It applies a dynamic programming algorithm to model whether changes within a block are likely a result of mutations, sequencing errors, or HRE. We use information from the nearby SNPs, so that if 1-2 alleles in a series of...
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  • 7
    A collection of pure Python algorithms and data structures
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  • 8
    gbview
    is a interactive molecular visualisation program designed especially designed for coarse-grained simulation of non-spherical particles. Ellipsoids (Gay-Berne), disks, and custom shaped uniaxial particle (e.g. pear-shaped particles) can be represented.
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  • 9
    sigrok
    The sigrok project aims at creating a portable, cross-platform, Free/Libre/Open-Source signal analysis software suite that supports various device types, such as logic analyzers, MSOs, oscilloscopes, multimeters, LCR meters, sound level meters, thermometers, anemometers, light meters, dataloggers, function generators, power supplies, GPIB interfaces, and more.
    Downloads: 2 This Week
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  • 10
    ReadWrapper is a Python toolset to prepare and package raw sequencing data ("reads") for submission to the Sequence Read Archive (SRA, http://trace.ncbi.nlm.nih.gov/Traces/sra/).
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  • 11

    AMBIENT

    Find active modules in metabolic networks using high-throughput data

    IMPORTANT: Since publication of the AMBIENT method in BMC Sys Bio, several updates have been made. If you wish to use the version used in the paper it is v0.6.3, however I recommend using the latest version which works in the same way but with additional options and has stability and performance improvements. Thanks for your interest! AMBIENT (Active Modules for Bipartite Networks) is a Python module that uses simulated annealing to find areas of a metabolic network (modules) that have...
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  • 12
    Open-source weather database system for storage of weather/water observations, forecasts, analysis fields, and hindcasts. includes loading program for GRIB files. Visit project website (http://wdb.met.no) for further information. Please note: this project has now moved to http://wdb.met.no
    Downloads: 0 This Week
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  • 13

    GS junior Webserver

    GS junior Webserver

    GS junior Webserver is a web based file server to easily access sequencing data of
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  • 14

    Mix

    Mix is a tool to combine multiple assemblies from NGS data.

    Mix is a tool that combines two or more draft assemblies, without relying on a reference genome and has the goal to reduce contig fragmentation and thus speed-up genome finishing. The proposed algorithm builds an extension graph where vertices represent extremities of contigs and edges represent existing alignments between these extremities. These alignment edges are used for contig extension. The resulting output assembly corresponds to a path in the extension graph that maximizes the...
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  • 15
    GEPETTO - Gene Prioritization in Java

    GEPETTO - Gene Prioritization in Java

    GEPETTO (GEne Prioritization ExTended TOol)

    GEPETTO (GEne PrioriTization ExTended TOol) is an original open-source framework, distributed under the LGPL license, for gene selection and prioritization on a desktop computer that ensures confidentiality of personal data. It takes advantage of the data integration capabilities in the SM2PH-Central Framework(KD4v,MSV3d,BIRD,..), combined with in-house developed gene prioritization methods. It currently incorporates six prioritization modules, based on gene sequence, protein-protein...
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  • 16
    pyisocalc

    pyisocalc

    Isotopic pattern calculator in python 2.x

    This is an isotopic pattern calculator written in python. It depends on re, sys, numpy, operator, itertools, and matplotlib.
    Downloads: 0 This Week
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  • 17
    PolyBoRi
    PolyBoRi is implemented as a C++ library for Polynomials over Boolean Rings, which provides high-level data types for Boolean polynomials. A python-interface yields extensible algorithms for computing Groebner bases over Boolean Rings.
    Downloads: 0 This Week
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  • 18

    C++ Airline Travel Solution Provider

    C++ Airline Travel Solution Provider

    The name has changed: that project has become the Airline Travel Solution Provider, AirTSP for short.
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  • 19

    SpiKeDeteKt

    An automatic spike detection program to be used with new KlustaKwik

    This is an automatic spike detection program which takes account of probe geometry and produces a .mask file to be used with the new masked version of KlustaKwik. We recommend you use Python 2.6 or 2.7, e.g. a free academic version can be obtained from Entthought Python. The input files for SpiKeDeteKt are: .dat (raw data file) .probe (probe file, described below - user constructed) parameters.py (optional - otherwise it uses defaultparameters.py) SpiKeDeteKt outputs...
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  • 20

    ResistPy

    Geophysical Modelling with R2/R3

    ResistPy is a Python program designed to work with R2 & R3t for processing, modelling & visualization of electrical resistivity data. ResistPy reads a variety of raw data formats and helps the user prepare the data for modelling with R2 or R3.
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  • 21
    GUI for DEDA

    GUI for DEDA

    GUI for DEmography Data Analysis

    <This project has been completely rewrote and transformed into a new one: https://sourceforge.net/projects/deday/. 2013/06/26> The graphic user interface for DEDA (DEmography Data Analysis), a scientific software package fitting survivalship data to a number of distributions using maximum likelihood (ML) method. Currently, Weibull (2p), Gompertz and Gompertz-Makeham are supported. IMPORTANT NOTICE: Only the GUI is provided here. In order to perform the analysis, one also need the DEDA...
    Downloads: 0 This Week
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  • 22
    Plotmeister is a data exploration tool. It parses your ASCII data and generates a simple (text-based) table format. You can modify this table and eventually create nice looking figures.
    Downloads: 0 This Week
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  • 23

    PLASMAKIN: a chemical kinetics package

    A library to compute the electron and chemical kinetics on plasmas

    PLASMAKIN is a package to handle physical and chemical data used in plasma physics modeling and to compute gas-phase and gas-surface kinetics data: particle production and loss rates, photon emission spectra and energy exchange rates.
    Downloads: 0 This Week
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  • 24
    GUANO

    GUANO

    GUANO - Graphical User interface for performing ANalysis Of variance

    Free and open source standalone program capable of conducting between, within, and mixed analyses of variance (ANOVA). Provides a simple graphical user interface for specifying analyses and interaction plots (analyses performed by http://code.google.com/p/pyvttbl/). Features: - Capable of high order factorial designs (> 2 factors) - Within and mixed analyses of variance provide corrections for violations of sphericity (Huynh-Feldt, Greenhouse-Geisser, Box) - A variety of data...
    Downloads: 0 This Week
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  • 25
    openBmap

    openBmap

    a free and open map of wireless communicating objects

    openBmap collects data and provides open maps and statistics of all communicating objects: cellular antennas, wifi hotspots. All softwares from back-end to client are open-source under AGPL v3 license.
    Downloads: 1 This Week
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