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This application provides a web based visual browser for NetCDF files. The application provides a simple and friendly userinterface for getting a quick overview of the data contained in the files.
PetriKit is a modular toolkit for Petri Net analysis. It allows the extraction of basic properties, extraction of invariants, and generation of reachability graph. Results can be formatted in plain text, HTML or XML files.
BushMan is a web interface and a quality assurance tool for biological sequence assembly.
It is a small application that helps process chromatograms, and it assembles using Phred and Phrap. It produces a FASTA formatted consensus sequence.
The Automatic Model Optimization Reference Implementation, AMORI, is a framework that integrates the modelling and the optimization processes by providing a plug-in interface for both. A genetic algorithm and Markov simulations are currently implemented.
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WikiPDF is a mediawiki extension based on Wiki2PDF that adds PDF/LaTeX features to mediawiki. Wiki2PDF is a python script to convert multiple articles of a mediawiki based wiki (pre-configured to use with www.wikipedia.org) to a single LaTeX or PDF file.
a webbased multiuser bibliography management tool. it allows to convert to bibtex, bibtexml and other formats such as html, text,.. the user is allowed to define own formats via xsl style sheets. anonymous users can be allowed to browse lists
TAROT is a easy-to-use framework for Monte Carlo simulations in python. Calculations between different kinds of randomly distributed numbers are made as easy as basic arithmetics. Tarot provides an interactive graphical interface for interpretation.
sarface is a user-interface to the sysstat/sar database which inputs data from sar and plots to a live X11 graph via gnuplot. It mimics the cmd-line options from sar but can cross-plot any two or more stats and apply simple mathematical functions them.
BrennerMD is a public domain Fortran molecular dynamics program by Donald Brenner and other people. This project is to maintain the original source code and to build a Python interface on top of it.
Enough lame computing! The project for re-desiging and re-writing the computer world, based on old & new ideas that have never been implemented in a practical way. Research in form of discussion is in the public forum at this sourceforge project page.
pyLPCTools is a replacement for the Flash Programming Tools use with the Philips(tm)/NXP(tm) LPC2xxx series of ARM based microcontrollers. pyLPCTools is a script together with some ARM assembly language and a Python userinterface. Please Donate !!
This will be a place to release tools that have not yet been added to SciPy (or will not be added for whatever reason). Currently an interface to ImageMagick is here.
PyGiNaC is a Python interface to the C++ symbolic math library GiNaC (www.ginac.de). Its design attempts to be an easy to use and convenient alternative to cint or ginsh.
SeqFreed is a bioinformatics desktop. It provides efficient access to sequence data and gene features, a customizable command line interface to locally installed bioinformatic tools and flexible display of either text or images in different page modes.
The Flamenco search and browse interface framework uses hierarchical faceted metadata to allow users to both refine and expand queries, while maintaining a consistent representation of a collection and seamlessly integrating keyword queries.
Yabman is a tool for managing bibliographic references. Its key features are a quality userinterface, a carefully designed data model, and sophisticated three-state hierarchical reference labeling. It is currently usable but in a pre-alpha stage.
PyVisi is the Python visualisation interface: a generic Python-based interface to many different scientific visualisation packages. PyVisi is intended for use in both standard and high-performance computing environments, and with the escript package.
A mouse tracker for OS X. The tool should provide a simple way to log the user's mouse movements in the background for (later) analysis. Currently only for Mac OS X (ObjC & Cocoa), planned to make platform independent with Python. It consists out of two
allTunes is an audible interface for the iTunes for Windows media player. This software is targetted mainly for use of by blind or visually-impaired users.
PyDaylight turns the Daylight toolkit into a rapid application development
system for chemical information by providing a full Python interface,
including a true object layer, iterators, exceptions and useful libraries.
Software to fit whole-sentence language models using the principle of maximum entropy. For developers of speech recognizers, text prediction interfaces, OCR, machine translation software.