Open Source PHP Scientific/Engineering Software

OpenEMR is an open source medical practice management application (EHR EMR PMS) featuring fully integrated electronic health records, scheduling, electronic billing, internationalization, free support, a vibrant community, and a whole lot more.

PEBL (Psychology Experiment Building Language) is a system designed for creating psychology and neuroscience experiments and tests. It is cross-platform, with the intention to run the same experiment, unchanged, on Linux, Windows, and Macintosh PCs.

BRL-CAD is a powerful cross-platform constructive solid geometry solid modeling system that includes an interactive geometry editor, ray-tracing for rendering & geometric analyses, network distributed framebuffer support, image & signal-processing tools.

Open Nautical Charts offers free seacharts for everybody. This charts are usable (offline) with several ship-plotters and Navigation-equipement on board. kap, Png, Jpr, png-cal, For user with Open CPN or SeaClear and other.

Arabeyes is a Meta project that is aimed at fully supporting the Arabic language in the Unix/Linux environment. It is designed to be a central location to standardize the Arabization process. Arabeyes relies on voluntary contributions.

We are now on GitHub: https://github.com/ScadaBR/ScadaBR ScadaBR is a SCADA (Supervisory Control and Data Acquisition) system with applications in Process Control and Automation, being developed and distributed using the open source model.

The Linux GPIB Package is a support package for GPIB (IEEE 488.2) hardware. The package contains a development environment consisting of a GPIB library written in C, kernel driver modules, and bindings for several other languages.

Now with IEC61850 support! This project combines existing open source projects and tools to create a very capable, mobile and cloud-friendly HMI system that can rival proprietary software. This approach makes it possible to join forces of each project (Chromium, SVG/HTML5, PHP, Lua, SQLite, Inkscape, Lib61850, OpenDNP3, Nginx, Vega, PostgreSQL, Grafana,…) to achieve a great set of open, evergreen, modular and customizable tools for building great HMIs for automation projects. This is not a toy project! It's been actually used in dozens of substations up to 230kV level and also in control centers with configurations up to 70.000 tags. Feel free to ask questions in the "Discussion" section. Help sponsoring OSHMI here https://github.com/sponsors/riclolsen. >>> Have a look also at my new SCADA project here: https://github.com/riclolsen/json-scada

OpenSeaMap's goal is to add nautical and tourism information a sailor could be interested in to OSM (OpenStreetMap) and to present it in a pleasing way. Those include beacons, buoys and other seamark and port information.

Open Information Systems for Emergency Services (Open ISES) is a community of software developers, paramedics, EMTs, law enforcement & fire fighters working together to create open source software & training materials for the emergency service community.

Build custom robots in your browser with IncrediBots! Design your robot by drawing shapes, joints, motors, and more! Then, pilot your machine using your own custom key bindings. NOTE: OPEN SOURCE VERSION CAN BE DOWNLOADED FROM "FILES" TAB!

Web-based Electronic Laboratory Notebook (ELN) with integrated Chemical Inventory by the group of Prof. Goossen (TU Kaiserslautern, Germany), based on PHP/MySQL. Allows (sub-)structure search, reaction planning, management of spectra and literature.

Integrated Hospital Information System. PHP,mySQL,PostgreSQL. Surgery, Nursing,Outpatient,Wards,Labs, Pharmacy, Security,Admission,Schedulers, Repair, Communication & more. Multilanguage, WYSIWYG forms, userconfig, embedded workbots. Modular & scalab

refbase is a web-based bibliographic manager which can import and export references in various formats (including BibTeX, Endnote, MODS XML, and OpenOffice). It can make formatted lists of citations and offers powerful searching, rich metadata, and RSS.

Xplico is a Network Forensic Analysis Tool (NFAT). The goal of Xplico is extract from an internet traffic capture the applications data contained. For example, from a pcap file Xplico extracts each email (POP, IMAP, and SMTP protocols), all HTTP contents, each VoIP call (SIP, MGCP, MEGACO, RTP), IRC, WhatsApp... Xplico is able to classify more than 140 (application) protocols. Xplico cam be used as sniffer-decoder if used in "live mode" or in conjunction with netsniff-ng. Xplico is used also in CapAnalysis: http://www.capanalysis.net

Please note that OWFS source code, and all Issue/Tickets/merge requests have now been moved to https://github.com/owfs/owfs/. Developer mailing lists will still be kept at Sourceforge. ---- OWFS -- 1-Wire file system. Use the Dallas 1-Wire and iButton chips with standard filesystem commands. Create temperature loggers. Monitor everything. OWHTTPD -- same system, only used as a light weight web server. OWFS is also ported to embedded routers, Mac OSX and Windows. Basically you can use these inexpensive little sensors and other chips with very simple wiring to sense and control the physical environment. The interface is very flexible -- everything from a web browser, to read and writing directly to the chip's "file" to integrating with your programs -- even over the internet. There is a growing number of 1-wire sensors: temperature, voltage, humidity, light, ultraviolet, pressure, thermisters, thermocouples, programmable microcontrollers, relays, lights, LCD panels, etc

RefDB is a reference database and bibliography tool for SGML, XML, and LaTeX documents, sort of a Reference Manager or BibTeX for markup languages. It is portable and known to run on Linux, Free/NetBSD, OSX, Solaris, and Windows/Cygwin.

Free CMMS(computerized maintenance management system) is a web application for industrial maintenance departments to manage work orders, preventative maintenance, parts inventory, labor, and equipment.

Open-LIMS (Laboratory Information Management System) is an organism independent project management suite for biological projects. It contains management for projects, samples and their related data.

GPL-licensed Electronic Medical Record and Practice Management system for medical providers that runs in any web browser in multiple languages. It provides an XML-RPC backend and multiple import and export formats, as well as reporting and other features

Web based PHP interface to communicate to Maxima computer algebra system in the server. It takes user input, send it to Maxima, and show the output back to website. It could send almost any commands including 'plot2d' and 'plot3d' to plot graphs.

* GSA-SNP2 is a successor of GSA-SNP (Nam et al. 2010, NAR web server issue). GSA-SNP2 accepts human GWAS summary data (rs numbers, p-values) or gene-wise p-values and outputs pathway genesets ‘enriched’ with genes associated with the given phenotype. It also provides both local and global protein interaction networks in the associated pathways. * Article: SYoon, HCTNguyen, YJYoo, JKim, BBaik, SKim, JKim, SKim, DNam, "Efficient pathway enrichment and network analysis of GWAS summary data using GSA-SNP2", Nucleic Acids Research, Vol. 46(10), e60(2018). * PubMed ID: 29562348 * DOI: 10.1093/nar/gky175 -> PLEASE MOVE OR MAKE A COPY OF 'DATA' FOLDER INTO YOUR INTENSIVE TEST FOLDER (I.E. LINUX, MAC OR WINDOWS SPECIFIED FOLDER) TO ALLOW THE PROGRAM TO FIND THE PREDESIGNED DATA. * UPDATE NOTE: -> Sep-1-2020: add an update for Ubuntu-20.04. You will need Boost library installed (sudo apt-get install libboost-all-dev) -> Mar-7-2018: revise header terms in the output file

OpenVigil provides a webinterface to analyse pharmacovigilance data, i.e., spontanous or systematic collections of treatments (drugs) and observed adverse events ("drug side effects"). FDA Adverse Event Reporting System (AERS) and other pharmacovigilance data (e.g., Canadian or German) are supported. The OpenVigil web-based analysis tools offer several analysis modes like extraction, filtering, mining of data and analyses via measurements of disproportionality like proportional reporting ratio or reporting odds ratios) and export to spreadsheets programs like Microsoft Excel or statistics programs like R. OpenVigil 1 operates on raw data, OpenVigil 2 on cleaned data (using drugbank.ca and drugs@FDA), OpenVigilFDA uses the official FDA online API. OpenVigil 2 supports query for ATC codes or certain chemical moieties. Other tools of the OpenVigil project include a calculator for measurements of disproportionality for a 2x2 contingency table and a drugname mapper using RxNorm.

https://formread.org FormRead is a completely free OMR (optical mark recognition) web software for scanning and grading user-filled, multiple choice forms. Create your formats with any of your office or drawing tools, scan them and parameterize their coordinates in an easy way. Once you have parameterized your form, you can print many of them, give it to your students/respondents, scan and recognize them with formread, and you can finally export the data in your preferred formats (excel, pdf, csv)

“garuda” is an intrusion detection system against wireless threats. It is a progressive proof of concept project to ward off wireless threats such as war-drivers, rogue AP, wifi DoS and MAC spoofing attacks. Please enjoy and we welcome your volunteerism.