Showing 27 open source projects for "data mapping"

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  • 1
    MANTI

    MANTI

    MANTI - Mastering Advanced N-Termini Interpretation

    MANTI is a one-stop shop N-termini annotation & evaluation solution. MANTI was previously (un)known as muda.pl ahead of v3.7, the project was renamed to MANTI.pl with v3.7 on 2019-06-24. It congregates information from different MaxQuant or DiaNN/MSFragger output files into a master file suitable explicitly for protein neo-termini analyses. The central anchor for the data congregation is the modificationSpecificPeptides.txt or diann-output.pr_matrix.tsv file - additional data is inferred...
    Downloads: 1 This Week
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  • 2
    Earth Enterprise

    Earth Enterprise

    Google Earth Enterprise - Open Source

    Earth Enterprise is the open source version of Google Earth Enterprise (GEE), a powerful geospatial application suite that enables organizations to build and host custom 3D globes and 2D maps using their own imagery and data. Unlike Google Maps or Google Earth, Earth Enterprise does not include Google’s proprietary imagery but instead provides the tools needed to manage and visualize private geospatial datasets. The system is composed of three main components: Fusion, which processes and...
    Downloads: 1 This Week
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  • 3
    MANTI.pl / muda.pl

    MANTI.pl / muda.pl

    muda.pl - MQ unified data assembler

    -------- ATTENTION START: RENAMING muda.pl was renamed to MANTI.pl with v3.7, project development can be tracked on the MANTI project page on sourceforge.net. Old versions remain here for archival purposes. -------- ATTENTION END muda.pl is an evaluation script (written in Perl) without great dependencies. It congregates information from 4 different MaxQuant output files into a master file suitable explicitly for protein neo-termini analyses. The central anchor for the data...
    Downloads: 0 This Week
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  • 4
    C-squares

    C-squares

    Concise spatial query and representation system (c-squares)

    C-squares is an easily implemented method for storage, querying and display of spatial data locations, based on a hierarchical, grid-based representation of the Earth' surface. Source code for encoding, decoding, mapping, etc. is provided via this site. Additional support is available by contacting the system developer, Tony.Rees@marinespecies.org; see also the c-squares home page at http://www.cmar.csiro.au/csquares/ .
    Downloads: 0 This Week
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  • 5
    MTKBabel is a Perl program to operate the i-Blue 747 GPS data logger. It should work also with other GPS devices based on the MediaTek MTK chipset. It is free software released under the GPL license.
    Downloads: 5 This Week
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  • 6

    MOIRAI

    Simple Scientific Workflow System for CAGE Analysis

    Cap analysis of gene expression (CAGE) is a sequencing based technology to capture the 5’ ends of RNAs in a biological sample. After mapping, a CAGE peak on the genome indicates the position of an active transcriptional start site (TSS) and the number of reads correspond to its expression level. CAGE is prominently used in both the FANTOM and ENCODE project. MOIRAI is a compact yet flexible workflow system designed to carry out the main steps in data processing and analysis of CAGE data. ...
    Downloads: 0 This Week
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  • 7
    XASTIR

    XASTIR

    Multiplatform Ham Radio APRS and Mapping Program

    NOTE: Code commits are FROZEN on SourceForge: New code is now at <http://github.com/Xastir/Xastir>. Real-time tracking & messaging of stations via radio/internet APRS data streams, w/125 map formats supported. Linux/FreeBSD/Solaris/MacOSX/Windows in any of 7 languages. Can also be used for mobile mapping w/GPS. MAILING LISTS ARE AT: PROJECT->WEB SITE.
    Downloads: 4 This Week
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  • 8

    BIRAP

    Bacterial Intergenic Region Analysis Pipeline

    BIRAP (Bacterial Intergenic Region Analysis Pipeline) is an open source, easy to use Perl pipeline that can be used to re-annotate bacterial genomes using experimental data. The tool integrates expression profile derived from RNA-seq and/or proteogenomics, compares it with existing in silico annotation and helps validate annotation, identify novel protein coding regions, putative non-coding RNA as well as help correct er-rors in the existing annotation. The pipeline requires “pileup” output from SAMtools for RNA-seq data and peptide/ePST locus file (GFF) from the Proteogenomic Mapping tool for prote-ogenomics data along with the genome and existing in silico annotation. ...
    Downloads: 0 This Week
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  • 9

    CIMS

    Crosslinking induced mutation site analysis

    This package includes the scripts to detect statistically reproducible crosslinking induced mutation sites (CIMS) and cross linking induced truncation sites (CITS) from HITS-CLIP data. References: Moore, M.*, Zhang, C.*, Gantman, E.C., Mele, A., Darnell, J.C., Darnell, R.B. 2014. Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis. Nat Protocols, 9:263-293. Zhang,C.†, Darnell, R.B.† 2011. Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data. ...
    Downloads: 0 This Week
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  • 10

    ADM to GPX

    Convert a Garmin ADM database file to a GPX file

    User data exported from later model Garmin GPSmap marine GPS sets consists of ADM files written to a VFAT-formatted SD card. This data includes user-generated waypoints and routes, and recorded GPS tracks. adm2gpx converts this data to industry-standard GPX records that may be imported into third-party mapping and GPS software.
    Downloads: 0 This Week
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  • 11
    Forerunner X01 Toolkit
    ForeRunner X01 toolkit provides an easy access to Forerunner 201/301/305/305E GPS-units. There are multiple command line tools to read data from GPS into database and tools to export data in different formats like gpx and tcx.
    Downloads: 0 This Week
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  • 12
    gpx2gpx tries to convert gpx-input in a format more or less similar to gpx1.1
    Downloads: 1 This Week
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  • 13
    GeoDB is a set of tools and perl modules to store, retrieve and search for information on geocaching and other geographical data sets.
    Downloads: 0 This Week
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  • 14
    Perl code scafflod for the automatic execution of main Next Generation Sequencing data processing and analysis.
    Downloads: 0 This Week
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  • 15
    GpsPhoto.pl geotags digital photos by using GPS track data recorded at the same time. Matches are based on closest timestamps. An optionally generated Google Earth KML or KMZ file contains the GPS tracks and the geotagged photos.
    Downloads: 0 This Week
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  • 16
    Geographic tag manipulator - a simple XSLT-based tool to add, remove, or change tags of OpenStreetMap objects.
    Downloads: 0 This Week
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  • 17
    VALARI is a Virtual Announced Launch And Recovery Informant for Mac OSX for GPS & Telemetry tracking of modern high power rocketry. Eventually we might port this to other OSes.
    Downloads: 0 This Week
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  • 18
    A generic geospatial analysis and viewing capability using Perl scripts that provides the foundation and structure for readily creating KML data files from disparate data sources. KML files can be read and viewed by Google Earth and other tools.
    Downloads: 0 This Week
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  • 19
    EMMA 2 is web-based server application for management, annotation, and analysis of microarray data. It provides mapping of gene expression data onto pathway data extensible analysis and visualization functions and MAGE-ML support.
    Downloads: 0 This Week
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  • 20
    Data and animal management software for large-scale phenotype screening Used by GNF for mouse ENU mutagenesis project. Data visualization & analysis, animal husbandry management, & automated QTL mapping. Usable as stand alone animal husbandry system.
    Downloads: 0 This Week
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  • 21
    Beam and it's follow-on I-Beam are sets of programs to produce coverage charts of radio sources. It has been used for RADAR, DME, VOR and various communications sources specific to aviation. However, it is also valid for cell phone, TV and radio towers
    Downloads: 0 This Week
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  • 22
    graphite: a portable graphics library, written in Java, JOGL and Postscript that allows rapid generation of high-quality graphs using an efficient, compact Java engine.
    Downloads: 0 This Week
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  • 23
    OSIOSS (Open Source Integrated Observing System Software) is a collection of code which can be used for geospatial observing systems merging data collection, management and products solutions with ocean observing systems (OOS) as an initial focus.
    Downloads: 0 This Week
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  • 24
    StateVis is a package that allows states (or groups) to create a browsable database of their Landsat holdings.
    Downloads: 0 This Week
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  • 25
    wfb2sql is a Perl script that extracts information from the CIA World Factbook and creates SQL statements for IBM DB/2, PostgreSQL or MySQL. This data builds a perfect database for learning and teaching SQL.
    Downloads: 0 This Week
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