Search Results for "convert"

.... ---- MView is a command line utility that extracts and reformats the results of a sequence database search or a multiple alignment, optionally adding HTML markup for web page layout. It can also be used as a filter to extract and convert searches or alignments to common formats. Inputs: - Sequence database search: BLAST, FASTA suites. - Multiple sequence alignment: CLUSTAL, HSSP, MSF, FASTA, PIR, MAF. Outputs: - HTML, FASTA, CLUSTAL, MSF, PIR, RDB (tab-separated). Found a bug? Please open an issue on the MView issue tracker at https://github.com/desmid/mview/issues or send an email to biomview@gmail.com.

...Data can also be taken from decoded BUFR messages. The extracted data can be written as XML or passed to a user-defined function (all done in Perl). It also provides XSLT style sheets to convert the XML to plain language (text, HTML), or XML with different schemas. A web-based (CGI) user interface can be used to download and display up-to-date weather data from NOAA, Ogimet, and other sources.

* Introduction: - This Module is a Library based Perl code. - The library provide: - Convert INFIX expressions to POSTFIX; - Convert POSTFIX expressions to INFIX and; - Perform POSTFIX context validations. - Context validation can be implemented in item selection routines or data context validation, when it is possible to identify data to be selected or ignored in some data analysis process. * NOTE: - Before any implementation, we recommend details in WIKI (https://sourceforge.net/p/csi-math-notation-postfixinfix/wiki/) or the CPAN Perl Modules, see: https://metacpan.org/pod/Math::Notation::PostfixInfix * Support: The Support Service is FREE. ...

Autoplot is a simple Perl script to plot Gnuplot files with simple dependency checking and conversion of the plots to different formats using rsvg-convert. The Gnuplot scripts must plot to a SVG terminal and output the result to STDOUT for the script to work as intended. The script reads all .gnuplot files in the working directory and creates SVG plots from them in svg subdirectory. SVG plots can be converted to PDF and PNG format, while the resulting files are placed in pdf and png directories, respectively.

To generate correct mature mRNAs, the exons must be identified and joined together precisely and efficiently by RNA splicing mechanism. It is to be noted that about one third or a half of all disease-causing mutations effect RNA splicing. However, there is little bioinformatics tools to directly identify sequence variants associated with splicing events (SVASE) based on RNA-seq data. We developed ISVASE, a simple and convenient tool for identifying SVASE directly using RNA-seq data....

User data exported from later model Garmin GPSmap marine GPS sets consists of ADM files written to a VFAT-formatted SD card. This data includes user-generated waypoints and routes, and recorded GPS tracks. adm2gpx converts this data to industry-standard GPX records that may be imported into third-party mapping and GPS software.

gpx2gpx tries to convert gpx-input in a format more or less similar to gpx1.1

Convert the Celera ASM assembly format to the Consed ACE or the CAF file format.

JTrak2UDCF is just a simple "interface / conversion" script taking JTrak's export files and convert them into UDCF format files usable by UDCF Compatible Diving Log Applications.

This is a utility to convert a set of fasta formatted sequences along with output from ELAND or SOAP (and other next generation sequence alignment in due time) to make them viewable using eagleview.

Convert time sequence data to C code which can be compiled and executed to generate data for output to hardware.

A simple command to convert calendar dates to julian dates. Quite useful in timing situations where you need elapsed time between dates. Also useful for astronomy applications.

The GPS Ride Plot project is software to convert a downloaded GPS track and generate a map image in PNG format. This has been used primarily to plot bicycle rides. It can also plot almost any GPS track and has done so for cars, trolleys or jet airliners.

cel2fr is a perl script that can be used to convert Affymetrix CEL files into a format matching an Illumina Final Report. The primary use of this tool is to work in concert with the CNV analysis tool CNVision (www.cnvision.org), but its use is ideal for meta-studies combining multiple datasets. Current version is not yet functional.