Search Results for "java open source projects" - Page 3

Technical analysis library with indicators like ADX, MACD, RSI, Stochastic, TRIX... includes also candlestick pattern recognition. Useful for trading application developpers using either Excel, .NET, Mono, Java, Perl or C/C++.

Open-source weather database system for storage of weather/water observations, forecasts, analysis fields, and hindcasts. includes loading program for GRIB files. Visit project website (http://wdb.met.no) for further information. Please note: this project has now moved to http://wdb.met.no

SeqWare has moved to GitHub, see https://github.com/SeqWare SeqWare is a project to create a tool set to work with next generation genome sequencers (SOLiD & Illumina). It includes a LIMS, Pipeline, and Query Engine. Check out the wiki link below to see documentation. You can get the source from the Develop link.

An integrated bioinformatics toolkit for analysis of ChIPseq data from the Illumina DNA sequencing platform. Includes filtering, quality control, simulation, peakfinding, visualization, and comparison of samples.

This project contains MEDEUR related software projects. This project is initiated by the Openkaart-community (http://www.openkaart.org), NedHIS, NICTIZ (http://www.nictiz.nl) .

Evoker is a graphical tool for plotting genotype intensity data in order to assess quality of genotype calls. It implements a compact, binary format which allows rapid access to data, even with hundreds of thousands of observations. PLEASE NOTE: This source repository is no longer active. See the github link above for the latest version.

This project aims the requirement of managed informations / documents in the treatment of patients, i.e. integrated care. The underlaying data model implements standards of electronic health recording, the project is based on a SQL db and Java EE framework. This is currently a student driven project for educational purposes.

MIDesigner (MID Intelligent Designer) is a utility to design multiplex identifier (MID) primers for use in sequencing projects. Thus, it is similar in intent to Barcrawl.

CODD is a tool for creating and analyzing statistical measures of "developer involvement" in free software projects.

This is a Java-based project for complex event extraction from text and co-reference resolution. Currently the code can read BioNLP shared task format (http://2011.bionlp-st.org/) and i2b2 Natural Language Processing for Clinical Data shared task format (https://www.i2b2.org/NLP/DataSets/Main.php). Event extraction includes finding events and the parameters for an event in a text. The method is based on SVM but other ML algorithms can be adopted. The method details are explained in the...

A Generalized Combinatorial Approach for Detecting Gene-by-Gene and Gene-by-Environment Interactions

Soaplab is a generator of Web Services providing a programmatic access to command-line (and other) applications on remote computers (an example of its usage is available at http://www.ebi.ac.uk/soaplab/)

A set of software utilities for processing and analyzing 16S rRNA genes including generating NAST alignments, chimera checking, and assembling paired 16S rRNA reads according to reference sequence homology.

GPL-licensed Electronic Medical Record and Practice Management system for medical providers that runs in any web browser in multiple languages. It provides an XML-RPC backend and multiple import and export formats, as well as reporting and other features

Parsers for biological data based on scanner generators like Flex (C), Re2c(C), Jflex (Java) and Ifickle (Tcl). This scanner generators are providing easier maintainance, development and higher speed than hand written scanners. Scanner output is SQL.

An experimental CEP (Complex Event Processing) engine. It implements the event stream processing as a library embeddable in C++ and Perl. Since then it has been renamed to Triceps, so please look at the new location https://sourceforge.net/projects/t

breve is a free, open-source 3D multi-agent simulation package designed for simulating decentralized systems and artificial life.

Microarray Gene Expression Database Group and OMG Gene Expression Standard (MAGE)

Interfaces and implementations for components of Earth Observing Systems. More information here: http://www.oostethys.org

IDEA (Interactive Display for Evolutionary Analyses) augments PAML with a graphical interface, phylogeny reconstruction using PhyML or PHYLIP, convenient and efficient parallel processing and visualizations.

CNV Workshop is a web-enabled platform for analyzing genome variation such as copy number variation (CNV). Learn about CNV Workshop in our associated BMC Bioinformatics manuscript: http://www.biomedcentral.com/1471-2105/11/74

DAGchainer identifies chains of gene pairs sharing conserved order between genomic regions, by identifying paths through a directed acyclic graph (DAG).

TinyOS is an operating system for embedded sensors and networks. Versions 2.0 and later of TinyOS should be downloaded from www.tinyos.net.

D.U.C.K (Determine segmentation of Unknown words by using Context Knowledge)is an NLP tool, which aims to find the correct segmentation for unknown words in written Hebrew. Statistics from different scopes will be used to determine the segmentation.

Biodiversity Information Group develops software tools and data standards that enable herbaria and museums to create dynamic distributed queries of their online databases. See http://bit.ly/bfirSh and http://bit.ly/bwpnSY for latest developments.