Matlab toolbox for Geometry Processing
ReViMS, a 3D volume rendering tool for light-sheet/confocal microscopy
ReViSP, a 3D volume rendering MATLAB tool for multicellular spheroids
GUI for fitting 3D single-molecule images using the double-helix PSF
Library for working with 3D rotations in Matlab/Octave
A software tool for tracking fluorescent cells in 3D
Open source 3D Matlab Isogeometric Analysis Code
C++ collection mostly for image processing