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C++ templates with generic nonlinear optimization algorithms
Highly tunable, simple to use collection of the templates, containing a set of classes for solving unconstrained large scale nonlinear optimization problems. Currently it contains:
-- Limited Memory Quasi Newton (L-BFSG)
-- BFSG
-- Conjugate Gradient
-- Gradient Descent
-- Wolf condition Line Search
-- Backtracking Line Search
-- Exact Golden Search
-- Golden Search with Wolf condition
We also distribute a set of tests with the library.
Software for making Clusters of Orthologous Groups (featuring the new EdgeSearch algorithm). Latest ref: Kristensen DM, Kannan L, Coleman MK, Wolf YI, Sorokin A, Koonin EV, Mushegian A. Bioinformatics 2010.