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Indexing and query tools for very large text corpora
The IMS Open Corpus Workbench is a collection of tools for managing and querying large text corpora (100 M words and more) with linguistic annotations. Its central component is the flexible and efficient query processor CQP, which can be used interactively in a terminal session, as a backend e.g. from a Perl script, or through the Web-based GUI CQPweb.
Artha is a handy thesaurus based on WordNet with distinct features like global hotkey look-up, passive desktop notifications, regular expression based search, etc.. Artha may be used as a free open-source replacement to the proprietary WordWeb Pro.
Binding site descriptor generation for SVM based classification.
A set of java programs that extract coordinate and chemical information from PDB files.
The binding site regions are extracted using grid based scheme.
For binding site, spatio-chemical descriptor is generated based on PocketMatch algorithm of Dr. Kalidas (author of this project too).
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FREJ stands for "Fuzzy RegularExpressions for Java" - it is a command-line tool and library which allow you easily compare strings with patterns disregarding nasty typos and considering several variants (like "Barack Obama", "B.H.Obama" etc.)
Project sources are moved to github:
https://github.com/RodionGork/FREJ
Tautomaton is a C++11 -template library for deterministic (DFA) and non-deterministic finite automata (NFA). It supports regularexpressions and efficient input matching of multiple regexps simultaneously. The library comes with a somewhat grep-like command-line tool for showcasing these features.
Ontea - Pattern based Semantic Annotation Platform. Ontea search or create semantic meta data from text or documents using pattern based approaches. Implementation currently includes regularexpressions (regex) patterns
A C++ utility library featuring a javascript interpreter, regularexpressions, automatic arrays, garbage collection, matrix handling, planar geometry (regions etc) and other useful features. Blends well with STL code.
sbmlop is a command-line utility to create, view and manipulate SBML (the Systems Biology Markup Language). It is ideally suited for operating on large batches of SBML files, and can extract and modify information using regularexpressions.
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The Perl Formal Language Toolkit (FLaT), is a set of compatible Perl modules used for investigating regularexpressions and finite automata. It is also a goal to create a tool kit, which may be used to create apps with FAs as underlying data structures..
Sequence studio main package provides classes and interfaces for various kinds of sequence alignment. Differently from regularexpressions it computes similarity with two initially unknown strings. Project page provides code generating applet.
A Win32 version of the popular linux FILE utility. It uses the same magic file format to scan and identify file types, regularexpressions are not currently supported, neither are big/little endian conversions. but im working on it. :-) This was effectiv
RElib is a shared library to allow programmers to have a C++ interface to deal, manage, and operate with Finite Automatons (Deterministic and Non Deterministic), and RegularExpressions to create programs for their needs, as for example to analyze a text
Purpose of SAWS is to facilitate process of web scraping by - 1) providing a pattern specification mechanism on top of normal regularexpressions 2) and implementation of common matching algorithm to run specified pattern on given source for any matches.