Showing 8 open source projects for "memory read"

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  • 1
    Bowtie 2

    Bowtie 2

    A fast and sensitive gapped read aligner

    Bowtie 2 is a fast, memory-efficient genomic read aligner used to map sequencing reads against long reference sequences such as mammalian genomes. It is especially effective for reads ranging from around 50 bases to hundreds or thousands of characters, and it supports modern sequencing workflows that require gapped, local, and paired-end alignment. The tool builds compact FM-index-based reference indexes, keeping memory usage low even for large genomes like the human genome. ...
    Downloads: 1 This Week
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  • 2
    Bowtie, an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers. Please cite: Langmead B, et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25.
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    Downloads: 292 This Week
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  • 3

    JMGF

    Java implementation for the Mascot Generic File Format (MGF).

    JMGF is a lightweight framework for handling MGF files. It supports reading, writing and parsing of MGF files. Files may be read/ written at once, or stream-based (memory efficient). It's stable, very intuitive and good integrated with Java 1.5 SDK and later.
    Downloads: 0 This Week
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  • 4

    JFASTA

    Java implementation for the FASTA file format.

    JFASTA is a lightweight framework for handling FASTA files. It supports reading, writing and parsing of single- or multi-FASTA files. Files may be read/ written at once, or stream-based (memory efficient). It's stable, very intuitive and good integrated with Java 1.5 SDK and later.
    Downloads: 0 This Week
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  • 5
    Linux Guist - Multi Lingual OS for Asia

    Linux Guist - Multi Lingual OS for Asia

    A Single Click Language Changer and Publishing System for Web and DTP

    ...Home/Single users can use a pen drive to save their work, while Company users will need a simple share PC. This PC need to run a free DHCP & Proxy service & can have printers & scanners. Pls. read wiki in this site for more detail
    Downloads: 0 This Week
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  • 6
    ...The latest version supports named fields in the STL files for tagging data parsed in the Prefix Tree and anonymous functions for parsing dynamic message payloads. We now output JSON objects and I'm working on HBase integration. By outputting to JSON it also leaves open the possibility for on the fly in memory correlation between events. Read the included README before starting, it has a quick start guide and info on the constructors.
    Downloads: 0 This Week
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  • 7
    Matlab VideoUtils

    Matlab VideoUtils

    Matlab Toolbox for reading and writing videos.

    Matlab Toolbox to process video files, which consists on a set of classes for reading, writing, correcting light changes and generating gaussian pyramids in real time. This toolbox is designed for Windows x64, Max OS X x64 and Linux x64. Through to use of Ffmpeg, it can reproduce and create videos very fast and also do no require to load the entire video file in memory. In addition the C++ code is already compiled in order to simplify the toolbox installation. In order to stay...
    Downloads: 0 This Week
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  • 8
    Linux command line query programme for the WH1081 weather station. (Not tried it on windoze)
    Downloads: 0 This Week
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