Search Results for "http dos tool"
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Showing 100 open source projects for "http dos tool"
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Hydrogen Bond Analysis Tool (HBAT)
HBAT 2 is migrated from PERL to Python.
HBAT(Hydrogen Bond Analysis Tool) is a tool to automate the analysis of hydrogen bonds present in a PDB Structure file. HBAT 2 is migrated from PERL to Python. Latest Documentation: https://hbat.abhishek-tiwari.com/ Web Server Version: http://hbat-web.abhishek-tiwari.com Latest Github Release: http://github.com/abhishektiwari/hbat Citation: Tiwari, A., & Panigrahi, S. -
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PFAAT is a Java-based multiple sequence alignment editor and viewer designed for protein family analysis. You can download PFAAT from http://pfaat.sourceforge.net/
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QUAST
Quality Assessment Tool for Genome Assemblies
...The tool also produces web-based reports condensing all information in one easy-to-navigate file. QUAST and its three follow-up papers (MetaQUAST, Icarus, QUAST-LG) papers were published in Bioinformatics; the last paper (WebQUAST) is out in Nucl Acid Research. -
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p3d
General data-reduction tool for fiber-fed integral-field spectrographs
p3d is a general data-reduction tool for use with fiber-fed integral-field spectrographs (IFSs); although, the spectrum viewer works with spectrum data cubes of any origin. The tool is built about the proprietary software IDL (Harris/EXELIS; see http://www.harrisgeospatial.com), but can be used without any license. Most slowly running loops are implemented in parallelized C (OpenMP). -
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TabuVis
An Interactive Visualisation for Tabular Data
TabuVis is a comprehensive visual analysis tool that provides a flexible, customizable and interactive visualization for tabular (or multidimensional) data. It utilizes scatter-plot visualization approach to provide comprehensive and interactive views for different attribute mappings. It provides single scatter-plot and multiple scatter-plots together with Map (GIS) capability. -
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Social Network Visualizer
Social Network Analysis and Visualization software
Visit our new site: http://socnetv.org Social Network Visualizer (SocNetV) is a social network analysis and visualization application. You can draw a social network (graph/digraph) or load an existing one (GraphML, UCINET, Pajek, etc), compute cohesion, centrality, community and structural equivalence metrics and apply various layout algorithms based on actor centrality or prestige scores (i.e. Eigenvector, Betweenness) or on dynamic models (i.e. Kamada-Kawai spring-embedder) -
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CAMPARI
Software for molecular simulations and trajectory analysis
We are proud to introduce version 5 of CAMPARI. We have added a number of new features, most notably a Python interface for interpreting user-supplied code (with the help of ForPy), a novel trajectory storage standard (with the help of libpqxx/PostgreSQL), and a module for performing transition path theory. Naturally, CAMPARI continues to provide the reference implementation of the ABSINTH force field paradigm and implicit solvation model. CAMPARI is a joint package for performing and... -
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ALAMODE
Ab initio simulator for thermal transport and lattice anharmonicity
ALAMODE is designed for analyzing lattice anharmonicity and lattice thermal conductivity of solids. By using an external DFT package such as VASP and Quantum ESPRESSO, you can extract harmonic and anharmonic force constants straightforwardly with ALAMODE. Using the anharmonic force constants, you can also calculate lattice thermal conductivity from first principles. For more information about ALAMODE, please visit the following webpages: Documentation :... -
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Habfuzz
A command-line tool for data-driven fuzzy modelling
Input 1 - A training dataset (multiple observations) of up to four variables (predictors) against one (response variable) Input 2 - A test dataset (multiple observations) of the same four variables with unknown response variable Output - Calculation of the response variable for each test observation using fuzzy logic or fuzzy rule-based Bayesian algorithms HABFUZZ is a habitat model, which can be used in ecohydraulic modelling applications for the calculation of the instream habitat suitability in various discharge scenarios in a simulated river reach. It comes with no graphical user interface but it's a one-click tool. Just provide your input and let HABFUZZ provide you the output. The HABFUZZ manual https://github.com/chtheodoro/habfuzz/blob/master/HABFUZZ_v2.5_manual.pdf HABFUZZ in the Journal of Open Source Software http://joss.theoj.org/papers/1ad27db8f0976c28a75e20d34eba5ee2 HABFUZZ website https://chtheodoro.wixsite.com/habfuzz -
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GridLAB-D is a new power system simulation tool that provides valuable information to users who design and operate electric power transmission and distribution systems, and to utilities that wish to take advantage of the latest smart grid technology. It incorporates advanced modeling techniques with high-performance algorithms to deliver the latest in end-use load modeling technology integrated with three-phase unbalanced power flow, and retail market systems.
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GelJ
GelJ is a Java program for the analysis of DNA gel fingerprints images
...Citing GelJ: J. Heras, C. Domínguez, E. Mata, and V. Pascual. GelJ – a tool for analyzing DNA fingerprint gel images. BMC Bioinformatics 2015, 16:270 http://doi.org/10.1186/s12859-015-0703-0. You can see more information about GelJ in https://sourceforge.net/p/gelj/wiki/Home/ Several videos explaining the use of GelJ are available in https://sourceforge.net/p/gelj/wiki/Videos/ Please address any question or comment to joheras at gmail.com -
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...MATS handles replicate RNA-Seq data from both paired and unpaired study design. More information can be found at http://rnaseq-mats.sourceforge.net.
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VStar
Multi-platform Variable Star Visualisation and Analysis
VStar is a multi-platform, easy-to-use variable star observation visualisation and analysis tool. Data can be read from a file or the AAVSO database, light curves and phase plots created, period analysis performed, and filters applied. Plugins can be developed, e.g. to make additional observation sources available. See also: 1. http://www.aavso.org/vstar-overview 2. http://www.aavso.org/forums/about-aavso/vstar 3. http://dbenn.wordpress.com/category/astronomy-science/vstar 4. http://www.citizensky.org/teams/vstar-software-development -
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TauFactor
MatLab App for calculating the tortuosity factor of microstructure
...TauFactor calculates this value using an over relaxed finite-different approach. This tool provides a fast computational platform applicable to the big datasets (>10^8 voxels) typical of modern tomography, without requiring high computational power. -
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DSPatch
The Refreshingly Simple C++ Dataflow Framework
Webite: http://flowbasedprogramming.com DSPatch, pronounced "dispatch", is a powerful C++ dataflow framework. DSPatch is not limited to any particular domain or data type, from reactive programming to stream processing, DSPatch's generic, object-oriented API allows you to create virtually any dataflow system imaginable. *See also:* DSPatcher ( https://github.com/MarcusTomlinson/DSPatcher ): A cross-platform graphical tool for building DSPatch circuits. -
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...Download the latest version of the code by clicking the "Code" tab and then "Download Snapshot". The green download button will get the latest major change (updated less frequently). For tutorials and more information, visit http://camino.org.uk. CAMINO IS A RESEARCH TOOL ONLY AND SHOULD NOT BE USED FOR CLINICAL PURPOSES. In downloading the code you explicitly agree to this condition.
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MLM Downline Simulator HD ➤ SWF
How to open a SWF file? Open it in a SWF PLAYER✔ or VIEWER ✔
...Save your data locally for unlimited comparisons in one tool. -
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AntibiogramJ
AntibiogramJ is a Java program for the reading of antibiogram-images
AntibiogramJ is a Java program for the identification, measurement and categorisation of inhibition zones in antibiogram images captured with any device that incorporates a camera (including digital cameras and mobile phones). Citing AntibiogramJ: A. Alonso, C. Domínguez, J. Heras, E. Mata, V. Pascual, C. Torres, and M. Zarazaga. AntibiogramJ: a Tool for Analysing Images from Disk Diffusion Tests. Computer Methods and Programs in Biomedicine 143:159-169. 2017. DOI: http://dx.doi.org/10.1016/j.cmpb.2017.03.010 You can see more information about AntibiogramJ in https://sourceforge.net/p/antibiogramj/wiki/Home/ Several videos explaining the use of AntibiogramJ are available in https://sourceforge.net/p/antibiogramj/wiki/Videos/ AntibiogramJ includes now the EUCAST v.9.0. ... -
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The DREAM Toolbox
The DREAM toolbox is a free open source acoustic field simulation tool
The DREAM (Discrete REpresentation Array Modelling) toolbox is a free open source toolbox, for both Matlab and Octave , for simulating acoustic fields radiated from common ultrasonic transducer types and arbitrarily complicated ultrasonic transducers arrays. The DREAM toolbox enables analysis of beam-steering, beam-focusing, and apodization for wideband (pulse) excitation both in near and far fields. The code in the svn repository # svn co... -
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cocolib / light field suite
CUDA library for continuous optimization and light field analysis
Library for continuous convex optimization in image analysis, together with a command line tool and Matlab interface. Implements several recent algorithms for inverse problems and image segmentation with total variation regularizers and vectorial multilabel transition costs. Also included is a suite for variational light field analysis, which ties into the HCI light field benchmark set and givens reference implementations for a number of our recently published algorithms. *** NOTE: documentation on the SourceForge page is outdated and not updated anymore, please visit http://cocolib.net *** -
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Active Intelligence Server
Reporting, Dashboarding, Analytic, Self-service BI, Ad-hoc reporting
...Tightly integrated user and role management ensure correct information distribution that prevents unauthorized access to information, collaboration is ever so easy with AIS that people with no BI knowledge can start real-time collaboration in minutes. AIS 2 is also available from the website http://activeintelligence.co.uk/download -
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Ethernet POWERLINK XDD Tool Suite
Provides eclipse plugins for XDD edit, validation and OD generation.
The plugins include functionality to edit and check CN / MN XDD / XDC files against the DS311 V1.2.0 and the DS 301 1.3.0 specification. Another plugin enables the user to generate the object dictionary header file from an XDD / XDC file for the openPOWERLINK (https://goo.gl/Cg77Oi) implementation. Please note that the validation functionality works properly for Controlled and Managing Node XDD / XDC files. Please use the update site to install the plugin in your eclipse... -
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LTL3DRA
LTL to deterministic Rabin automata translator based on LTL3BA
THE PROJECT HAS BEEN MOVED TO GITHUB, FOLLOW https://github.com/xblahoud/ltl3dra LTL3DRA is a translator of a fragment of LTL formulae to deterministic Rabin automata. It is based on the popular tool named LTL3BA written by Tomas Babiak (available at https://sourceforge.net/projects/ltl3ba/). The translation used in LTL3DRA is described in T. Babiak, F. Blahoudek, M. Křetínský, and J. Strejček: Effective Translation of LTL to Deterministic Rabin Automata: Beyond the (F,G)-Fragment (2013) In 11th International Symposium on Automated Technology for Verification and Analysis (ATVA 2013) In order to compile LTL3DRA, the BuDDy library (http://sourceforge.net/projects/buddy/) is needed. ... -
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Lata is a file format to store CFD results, with special care for huge datasets. This project provides tools for manipulate and convert the lata files. This project is part of the VisIt plugin reader. The Snorky3D sofware is presented in the following conference communication: Visualisation of CFD computations: millions of particles in real time with Snorky3D Visu 2012, september 2012, Paris, France http://visu2012.imag.fr/articles/mathieu.pdf
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...The software has been optimized for microarray and deep parallel sequencing data, however it can accept any character delimited tabular data sets. HTDP can also import, process and convert Variant Call Format (VCF) files ver. 4.0, 4.1 and 4.2 (http://samtools.github.io/hts-specs/VCFv4.2.pdf). HTDP provides quick filtering functionality and can process data consisting of single or multiple input files. Citation: Madanecki P, Bałut M, Buckley PG, Ochocka JR, Bartoszewski R, Crossman DK, et al. (2018) High-Throughput Tabular Data Processor – Platform independent graphical tool for processing large data sets. ...
