Search Results for "brain"
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Showing 46 open source projects for "brain"
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CBIG
Computational Brain Imaging Group tools
Brain parcellation tools (e.g., Yeo networks, Schaefer parcellations) for cortical mapping. -
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FieldTrip
The MATLAB toolbox for MEG, EEG and iEEG analysis
FieldTrip is the MATLAB software toolbox for MEG, EEG and iEEG analysis, which is released free of charge as open source software under the GNU general public license. FieldTrip is developed by members and collaborators of the Donders Institute for Brain, Cognition, and Behaviour at Radboud University, Nijmegen, the Netherlands. The toolbox offers advanced analysis methods of MEG, EEG, and invasive electrophysiological data, such as time-frequency analysis, source reconstruction using dipoles, distributed sources and beamformers and non-parametric statistical testing. It supports the data formats of all major MEG systems (CTF, Neuromag/Elekta/Megin, BTi/4D, Yokogawa/Ricoh, FieldLine) and of most popular EEG systems, and new formats can be added easily. ... -
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SimPET
A web platform for the MC simulation of realistic brain PET data
SimPET (http://www.sim-pet.org) is an open, efficient, and user‐friendly online platform for the generation of synthetic brain PET datasets. The platform offers the ability to generate realistic activity and attenuation maps from patient's PET/CT and MRI images. These maps can then be simulated, and sinograms and simulated images can be downloaded. More advanced features can be obtained by using the SimPET scripts: https://github.com/txusser/brainviset_simset https://github.com/txusser/simpet (New version pre-alpha) You can also upload your own phantoms to simulate. ... -
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mTRF-Toolbox
A MATLAB package for modelling multivariate stimulus-response data
...It can be used to model the functional relationship between neuronal populations and dynamic sensory inputs such as natural scenes and sounds, or build neural decoders for reconstructing stimulus features and developing real-time applications such as brain-computer interfaces (BCIs). Toolbox Paper: http://dx.doi.org/10.3389/fnhum.2016.00604 Methods Paper: https://doi.org/10.3389/fnins.2021.705621 -
Grafana: The open and composable observability platformGrafana is the open source analytics & monitoring solution for every database.
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iElectrodes
intracranial electrodes localization toolbox
...The toolbox works with ECoG (subdural grids and strips) and SEEG (depth) electrodes. The new GridFit algorithm can precisely localize high-density electrodes (up to 3mm). Brain parcellations (atlas) and surfaces can be imported to aid 2D and 3D visualization and anatomical localization can be done in native or normalized space. You can plan grid and depth electrode array implantations and compare them with the implanted locations. Additional scripts are provided for image coregistration using SPM, Freesurfer pipeline integration, etc. ... -
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PDP-OmniSim
PDP-OmniSim simulating parallel and distributed processing systems
...The framework provides researchers with robust tools for large-scale simulations of networked systems and their emergent behaviors. 🎯 Key Scientific Contributions 🔬 Interdisciplinary Research Domains Computational Neuroscience: Large-scale neural population dynamics, brain-inspired computing architectures, and neuro-symbolic AI systems Distributed Systems: Scalable parallel processing simulations, resource allocation optimization, and fault-tolerant computing Complex Systems: Emergent behavior in networked systems, self-organizing criticality, and adaptive network topologies -
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JPL Open Source Rover Project
A build-it-yourself, 6-wheel rover based on the rovers on Mars
The JPL Open Source Rover is an open source, build it yourself, scaled down version of the 6 wheel rover design that JPL uses to explore the surface of Mars. The Open Source Rover is designed almost entirely out of consumer off the shelf (COTS) parts. This project is intended to be a teaching and learning experience for those who want to get involved in mechanical engineering, software, electronics, or robotics. JPL is always looking to inspire the next generation of scientists, engineers,... -
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Gnaural
Entrain your brain!
A programmable audio generator intended as an aural aid to meditation, implementing the binaural beat principle as described in Gerald Oster's Oct. 1973 Scientific American article "Auditory Beats in the Brain." -
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JDecisiontable
Stop to rack your brain, start using process-oriented decision tables!
...Get the test cases necessary to test your piece of logic with one click. 6. Other than in traditional decision tables, you can mix conditions and actions. => Stop to to rack your brain - start using process-oriented decision tables! <= -
Desktop and Mobile Device Management SoftwareDesktop Central is a unified endpoint management (UEM) solution that helps in managing servers, laptops, desktops, smartphones, and tablets from a central location.
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The purpose of this program is to provide the user with a convenient algorithm for automatic Independent Component (IC) selection with respect to the contributions of the ICs to a certain event-related brain potential (ERP). www.jan-wessel.de
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SIGVerse
Simulator for Human-Robot Interaction, used in the RoboCup@Home
...Since the mechanisms of such real-life intelligent systems are so complex, such as the physical interactions between agents and their environment and the social interactions between agents, comprehension and knowledge in many peripheral fields such as cognitive science, developmental psychology, brain science, evolutionary biology, and robotics. Therefore, we have been developing a simulator environment called SIGVerse, which is a simulator that combines dynamics, perception, and communication simulations for synthetic approaches to research into the genesis of social intelligence. In this paper, we introduce SIGVerse, its example application and perspectives. -
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Entrainer is a Java program (JRE 1.8.0_40+ required, available from http://java.sun.com/javase/downloads/index.jsp) which creates binaural beat frequencies with sound, light and animations for the purpose of entraining one's brain waves.
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smartblob
tiny code, html webcam game or plug brain in each blob, java server
You play a 2d blob that reshapes to grab bend bounce and swing on objects floating in midair (like a platformer game), except acrobaticly your view spins when your blob does. I'm planning a huge multiplayer world, some blobs played by people holding a bendable loop game controller (tape a 1 meter cut of thick extension cord into a loop) in front of webcam and bend it to bend your blob on screen, and other blobs controlled by AI. This is a game for general AI research in a fun way people can... -
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CAnaBIS stands for "Computer Analysis of Brain Image Statistics". Its aim is to provide a C++ library of file I/O and efficient computational routines for NifTI brain images.
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Brain Workshop
Python implementation of the Dual N-Back mental exercise
Brain Workshop is a Python implementation of the Dual N-Back mental exercise. This exercise is the only mental activity that has been scientifically shown to improve your short-term memory (working memory) and fluid intelligence. -
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Toolboxes for SPM (http://www.fil.ion.ucl.ac.uk/spm/) developed at Freiburg Brain Imaging (http://fbi.uniklinik-freiburg.de/)
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Visual Integer Factor
Puzzle game demonstrating whats so hard about binary integer factoring
VisualIntFactor will be an interactive educational and scientific tool demonstrating multiply, factor, conversion between unary counting and binary integers, all in the same grid of hexagons. This grid is based on pascals triangle, which is a 1d cellular automata that calculates (X choose Y) factorials by each cell being the sum of the 2 cells upleft and upright. Draw a binary integer from a cell going upright, then explore the allowed transforms which may lead you to a factored state in 2... -
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DRAMMS
A Deformable Medical Image Registration Toolbox
...Released by Section of Biomedical Image Analysis (SBIA) at the University of Pennsylvania. Some typical applications of DRAMMS include, -- Cross-subject registration of the same organ (can be brain, breast, cardiac, etc); -- Mono- and Multi-modality registration (MRI, CT, histology); -- Longitudinal registration (pediatric brain growth, cancer development, mouse brain development, etc); -- Registration under missing correspondences (e.g., vascular lesions, tumors, histological cuts). DRAMMS runs in command line in UNIX/Mac OS, It accepts Nifti/ANALYZE/MetaImage image formats. ... -
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METAlab GTG
Matlab toolbox to run a GLM on graph theoretic properties in MRI data
This Matlab toolbox runs a GLM on graph theoretic network properties in brain networks. The GLM accepts continuous & categorical between-participant predictors and categorical within-participant predictors. Significance is determined via non-parametric permutation tests. The toolbox allows testing of both fully connected and thresholded networks (based on a range of thresholds). The toolbox also provides a data processing path for resting state fMRI data. -
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Parallel HRRT Deconvolution is a multithreaded ImageJ plugin for motion correction of PET brain images.
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sphereGL
Stroop test using OpenGL
...The selection object will be one of its kind so the user has to find it and select it. During this search the time it takes the subject to find the object is recorded. Also the subject's brain activity is measured with an FNIR device for later processing. The process will be prompt then objects. This will be repeated for a predetermined time. The Java version of this project will be better looking and more intuitive. -
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tools4BCI
Various tools for Brain-Computer Interaction
Within this project we want to provide some tools maybe usable for Brain-Computer Interaction. This is also done in coorporation with bcistandards.org to establish some common ground for standardization processes. -
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Topographica
Simulation software for brain modelling
Topographica is a neural modeling package developed in a Human Brain Project grant from NIH. Topographica helps neuroscientists and computational scientists simulate and understand how topographic maps contribute to brain function. Topographica is now primarily maintained at github.com; see https://github.com/ioam/topographica for recent updates and releases. -
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UPDATE: The latest version of NNScore1 can be found here: http://git.durrantlab.com/jdurrant/nnscore1 The latest version of NNScore2 can be found here: http://git.durrantlab.com/jdurrant/nnscore2 ================ NNScore is a scoring function for characterizing the potency of receptor-ligand complexes. It is based on neural networks, computational models that simulate the microscopic organization of the brain.
