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A free, open source, artificial life, genetic evolution simulation in which small creatures called Neds roam the world, mate with one another, harvest food, eat and eventually die.
Re-searcher is the system for recurrent psiblast searches. It enables timely detection of new proteins on the protein sequence databases. Searches can be done on a local server or at NCBI. It has a user-friendly web interface.
An effort to create free and open enviroment, to build complex "rail world", including all rail technology lovers' interests - locomotives (steam, diesel, electric) - driving or documentation, physics, traffic control, etc.
IFS Tools is a set of Java applets for the interactive, graphical construction of iterated function system (IFS) fractals. Output is in the form of IFS code and graphics.
WOOKI is a peer-to-peer wiki. It based on unstructured p2P network with data replication. WOOT framework synchronizes data. SWOOKI is a semantic extenion of WOOKI. It is implemented as a plugin of WOOKI. SWOOKI is peer-to-peer semantic wiki.
The TandemSearcher is a Java based application for searching for tandem repeats in the DNA sequences. It is based on the Burrows-Wheeler Transform (BWT).
This is a simulation for x-plane pilots and controllers. It simulates the whole ATC in Switzerland. Included are: ATMS(the server), ATMC(for controllers), PilotClient(for pilots) amd PlaneSim(simulates planes).
The Open Context Platform (OCP) is a middleware for building distributed, context-aware applications, is implemented in Java and allows to manage some contextual sources. Manage models ontology written in owl.
Knotwork is a graphical application to create knotworks in a celtic, arabic or viking style. User draws a graph defined by vertices and edges, which gives the basis for building the knotwork. Web page: http://knotwork.sourceforge.net/index.html
Input method based on Java(TM) Input Method Framework(IMF). To install,copy it to "jre/lib/ext", use it as "Chinese Pinyin" IME in any java swing applications. "Japanese" IME is also provided.
Processes boolean functions which can be provided either as a list of 0s and 1s or which can be provided as a formula in first-order logic (using disjunctive or conjunctive normal forms). Internally the Quine McCluskey algorithm is used.
An extended version of RoboCup Rescue Simulation official viewer intended to make it more informative. It utilizes charts, statistics and some missing little useful features.
Extraction of binding sites of ligands and search for unknown binding sites on apoproteins. Some call it docking. Some call it binding site detections. Some call it knowledge based.
PepT-IDE is a protein analysis tool that is used for multiple sequence alignment, 3D visualization and displaying protein contact maps for protein sequences and structures. It also has feedback communication between the different views of the protein.
The Swiss Protein Identification Toolbox (swissPIT) is a project at the Swiss Institute for Bioinformatics (SIB) in Geneva which aims at the development of an automated analysis system to identify proteins using MS and MS/MS based data.