Showing 9762 open source projects for "gnu/linux"

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  • 1
    iMSAT
    iMSAT represents a full update of the vcf2MSAT program. This command line python program allows for a user to use the polymorphism data generated using SAM- and BAM-tools and a .fasta alignment file to search for polymorphic microsatellite markers (MSATs or STRs). By identifying polymorphic makers, rather than simple repeat regions as previous programs have done, iMSAT greatly increases the speed at which polymorphic MSATs that can be identified -- saving researchers precious time and...
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  • 2
    PyRadmon Reborn

    PyRadmon Reborn

    PyRadmon, a Python script to use on both Linux and Windows.

    PyRadmon Reborn. This project started after the original programmers quit supporting it. The project now contains support for audio*, has a version that supports two Geiger counters** and a cleaner, more stable code. * = PyAudio is used as library for the audio support. ** = The two counters both run in their own thread. UPDATE-2015-2: * Added timeouts to sockets to prevent crashing of the script. * Updated some comments. UPDATE-2015-1: Since there have been some passed time...
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  • 3

    Control Interface Victor 86C, Voltcraft

    Control Voltcraft Power Supply and Victor 86C Multimeter

    ANNOUNCEMENT Project has moved to a proprietary website! http://www.instruman.it Updated source code available at https://instruman.codeplex.com/ This is an interface used to program and control Voltcraft DPPS-32-15 Power Supply, and to log data from Victor 86C Multimeter. It's an all-in-one solution to use the two instruments at the same time for Scientific, Research and Study purposes. Features avaible are the following: -Victor 86C USB HID connection protocol -86C data reading...
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  • 4
    SFS_CODE (Selection on Finite Sites under COmplex Demographic Events) performs forward population genetic simulations under a general Wright-Fisher model with arbitrary demographic, selective, and mutational effects.
    Downloads: 1 This Week
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  • 5

    came

    Identification of chromatin accessibility from NOMe-seq

    Chromatin accessibility plays a key role in epigenetic regulation of gene activation and silencing. Open chromatin regions allow regulatory elements such as transcription factors and polymerases to bind for gene expression while closed chromatin regions prevent the activity of transcriptional machinery. Recently, nucleosome occupancy and methylome sequencing (NOMe-seq) has been developed for simultaneously profiling of chromatin accessibility and DNA methylation on single molecules. However,...
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  • 6

    JMapViewer

    Java Swing component for integrating OSM maps into your Java app.

    This project offers the Mavenized format of the official "JMapViewer" project. Official project code on: https://trac.openstreetmap.org/browser/subversion/applications/viewer/jmapviewer?order=name Please, note that no development is performed in this SVN, just contains Maven artifact of official releases (starting from 1.14 version) If you want to give it a try, download code and run the Demo: > mvn compile package > cd target > java -jar JMapViewer-1.14.1-Demo.jar
    Downloads: 8 This Week
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  • 7

    SAT-Assembler

    Scalable and accurate targeted gene assembly for large-scale NGS data

    SAT-Assembler is a scalable and accurate gene assembly tool for large-scale RNA-Seq and metagenomic data. It recovers genes from gene families of particular interest to biologists with high coverage, low chimera rate, and extremely low memory usage compared with exiting gene assembly tools. Moreover, it is naturally compatible with parallel computing platforms.
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  • 8

    MorphoLim

    MorphoLim : identifying city boundaries

    MorphoLim has been moved to sourcesup (https://sourcesup.renater.fr/morpholim/). MorphoLim is dedicated to the identification of the morphological boundary of urban agglomerations. The method used avoids the need for any pre-defined maximum distance threshold between buildings. It is based on the conceptual and methodological tools of fractal geometry. Authors of the application: Cécile Tannier, Gilles Vuidel, and Pierre Frankhauser (ThéMA, Besançon, France)
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  • 9
    SPIW - Scanning Probe Image Wizard

    SPIW - Scanning Probe Image Wizard

    Scanning Probe Image Wizard - MATLAB Toolbox

    SPIW is a MATLAB toolbox, for automated processing of scanning probe microscope images. Tools are applicable to all SPM images, but the main focus is on images with atomic or molecular resolution. SPIW is primarily a MATLAB toolbox with functions designed to be called in a user's own script. SPIW also has a very basic GUI for browsing and exporting images. For information on SPIW's performance see our publication ( http://dx.doi.org/10.1063/1.4827076 ) in the Review of Scientific...
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  • 10

    Folder

    Toolbox for modelling deformation in layered media in 2D

    Folder is a tool to simulate and analyse the development of structures in mechanically layered media during layer parallel shortening or extension. It includes a graphical user interface that allows for easy designing of complex geometrical models, defining material parameters (including linear and non-linear rheology), and specifying type and amount of deformation. It also includes a range of features that facilitate the visualization and examination of various relevant quantities e.g....
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  • 11
    riboFR-seq

    riboFR-seq

    A novel approach to linking 16S rRNA amplicon profiles to metagenomes

    16S rRNA amplicon analysis and shotgun metagenome sequencing are two main culture-independent strategies to explore the genetic landscape of various microbial communities. Recently, numerous studies have employed these two approaches together, but downstream data analyses were performed separately, which always generated incongruent or conflict signals on both taxonomic and functional classifications. Here we propose a novel approach, RiboFR-Seq (Ribosomal RNA gene Flanking Region...
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  • 12
    The Tolven platform and ePHR and eCHR applications enable interoperability across electronic health records for consumers and clinicians. Using Java, EJB3, Faces, Facelets, AJAX, relational database, and LDAP for security.
    Downloads: 0 This Week
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  • 13
    Collaborative infrastructure for Collaborative Product Development (manufacturing) within Extended and Virtual Enterprise.
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  • 14
    XR3FoodAnalyser

    XR3FoodAnalyser

    Analyze food ingredients!

    Comments: Confirm that the food you eat is health with this app.Including over 5000 ingredients!!! System Requirements: Java 1.8.0_45++ required.
    Downloads: 0 This Week
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  • 15
    RoiView
    Explore InSAR data and more
    Downloads: 0 This Week
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  • 16
    The Ground Station Software Suite projects aims at providing free, useful software tools for ham radio operators. Currently, this projects hosts the Grig communication radio control. The source repository has been moved over to github.
    Downloads: 12 This Week
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  • 17

    JUMP Database Query Plugin

    DB Query Plugin for OpenJump

    The JUMP DB Query Plugin is an extension for the OpenJUMP GIS platform that allows OpenJUMP users to give arbitrary database queries to retrieve and display geographic feature sets. Spatial databases currently supported are PostGIS, Oracle Spatial, MySQL, and SpatiaLite.
    Downloads: 0 This Week
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  • 18
    OpenSeaMap
    OpenSeaMap's goal is to add nautical and tourism information a sailor could be interested in to OSM (OpenStreetMap) and to present it in a pleasing way. Those include beacons, buoys and other seamark and port information.
    Downloads: 7 This Week
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  • 19
    API library call APPA109N.DLL

    API library call APPA109N.DLL

    (retrieving data from Multimeter and sound measurement data)

    This library (the DLL), to work with a multimeter APPA-109N through physical or virtual COM port over USB in OS NT/2000/2003/XP/Vista/7/8, designed for querying, reading and decoding data measurements APPA WinDMM100 protocol 95/98 and sound measurement data. DLL provides universal access for other applications, regardless of the language in the environment Win OS. DLL for use in their projects comply with the agreement on stdcall-calls. Type of calling convention is declared after the...
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  • 20
    PAL (physics abstraction layer) is a portable C++ physics abstraction API. It provides a unified interface to a number of physics engines.
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  • 21
    simECG is an ECG signal simulator aimed for basic training and experimenting. As a full software ECG signal generator, it's ideal for training and demonstration purposes. You can create customizable signals usually present in many pathologies.
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    Downloads: 32 This Week
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  • 22
    Downloads: 0 This Week
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  • 23

    GLroboop

    OpenGL interface using the package ROBOOP.

    OpenGL interface using the package ROBOOP. Uses wxWidgets for the interface and OpenGL to provide 3D visualization of the robot.
    Downloads: 0 This Week
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  • 24
    Open XAL

    Open XAL

    Accelerator Physics Framework

    Open XAL is an open source development environment used for creating accelerator physics applications, scripts and services. This project is a collaboration among SNS, CSNS, ESS, GANIL, TRIUMF and FRIB.
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  • 25
    Testability Measurement Tool

    Testability Measurement Tool

    Performs SCOAP and PODEM algorighms on ISCAS89 Netlists.

    This application calculates combinational and sequential SCOAP parameters (CC0, CC1, CO, SC0, SC1, SO) and Testability Index parameter from a ISCAS89 netlist. It also performs the PODEM algorithm to check testability of a net against a single stuck at 0 or 1 fault.
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    Downloads: 0 This Week
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