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Showing 674 open source projects for "https"
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MToolBox
A bioinformatics pipeline to analyze mtDNA from NGS data
...MToolBox provides also a Variant Call Format file (version 4.0) featuring, for the first time, allele-specific heteroplasmy. Please, check out the most recent updates of the source code with the Github repository of MToolBox: https://github.com/mitoNGS/MToolBox or visit the Web version of MToolBox @ MSeqDR: https://mseqdr.org/mtoolbox.php -
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DeepScaleTool
Estimation of deep-submicron technology scaling
...Please make sure you enable macros while opening the DeepScaleTool.xlsm file. This tool was developed by Satyabrata Sarangi and Dr. Bevan Baas at UC Davis. This work was presented at 2021 IEEE ISCAS. To cite the paper - https://ieeexplore.ieee.org/abstract/document/9401196 S. Sarangi and B. Baas, "DeepScaleTool: A Tool for the Accurate Estimation of Technology Scaling in the Deep-Submicron Era," 2021 IEEE International Symposium on Circuits and Systems (ISCAS), 2021, pp. 1-5, doi: 10.1109/ISCAS51556.2021.9401196. -
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...If you want to download this project and use it, please cite the paper: Zhou, S., Li, B. & Nie, H. Parametric fitting and morphometric analysis of 3D open curves based on discrete cosine transform. Zoomorphology (2021). https://doi.org/10.1007/s00435-021-00520-w
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--- IMPORTANT : This project has been moved to GitHub at https://github.com/clstoulouse/motu-client-python. Download the last version from the release page https://github.com/clstoulouse/motu-client-python/releases. --- Motu is a high efficient and robust Web Server which fills the gap between heterogeneous Data Providers to End Users. Motu handles, extracts and transforms oceanographic huge volumes of data without performance collapse.
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lpsolve
Mixed Integer Linear Programming (MILP) solver.
Mixed Integer Linear Programming (MILP) solver lp_solve solves pure linear, (mixed) integer/binary, semi-cont and special ordered sets (SOS) models.lp_solve is written in ANSI C and can be compiled on many different platforms like Linux and WINDOWS This project is moved to github: https://lp-solve.github.io/ -
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Takin
Inelastic neutron scattering suite.
The main development repository can be found here: https://code.ill.fr/scientific-software/takin -
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FDMNES powered by sparse solvers
The sources and builds history of FDMNES project
The sources and builds history of FDMNES project (http://neel.cnrs.fr/spip.php?rubrique1007&lang=en ) with parallel sparse solvers moved to github: https://github.com/gudasergey/fdmnes -
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Calis-p
Estimates delta13C of species in a microbiome from proteome data
...For successful SIP, it is extremely sensitive, but requires the 13C fraction to remain below 10%. A newer version is available at github and we strongly recommend to try it out: https://github.com/kinestetika/Calisp. -
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The Kinetic Simulation Algorithm Ontology (KiSAO; http://co.mbine.org/standards/kisao) is an ontology of algorithms for simulating and analyzing biological models, as well as the characteristics of these algorithms, their input parameters, and their outputs. In addition, KiSAO captures relationships among algorithms, their parameters, and their outputs. Development of KiSAO has moved to https://github.com/SED-ML/KiSAO/.
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Open Source Data Quality and Profiling
World's first open source data quality & data preparation project
...It also had Hadoop ( Big data ) support to move files to/from Hadoop Grid, Create, Load and Profile Hive Tables. This project is also known as "Aggregate Profiler" Resful API for this project is getting built as (Beta Version) https://sourceforge.net/projects/restful-api-for-osdq/ apache spark based data quality is getting built at https://sourceforge.net/projects/apache-spark-osdq/ -
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OpenFrames
Real-time interactive 3D graphics API for scientific simulations
OpenFrames has moved its primary development repository to GitHub! Everything else will follow. Get it at https://github.com/ravidavi/OpenFrames/wiki OpenFrames is an Application Programming Interface (API) that allows developers to provides the ability to add interactive 3D graphics to any scientific simulation. A simulation developer can use OpenFrames to specify what they want to visualize, without having to know any details of computer graphics programming. -
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ExRandom
Sampling exactly from the normal and exponential distributions
...This library provides an implementation of the algorithms described in C. F. F. Karney, Sampling exactly from the normal distribution, ACM Trans. Math. Software 42(1), 3:1-14 (Jan. 2016), https://doi.org/10.1145/2710016, https://arxiv.org/abs/1303.6257. -
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DigiOz .NET Portal
ASP.NET MVC Based Portal CMS System to Create an Instant Website
...List of Technologies used: - ASP.NET MVC 5 - Microsoft SQL Server - Bootstrap - HTML 5 - jQuery Demo Site: http://digioznetportal.digioz.net/ Source Code: https://sourceforge.net/p/digioznetportal/codenew/ci/master/tree/ Installation Instructions: https://sourceforge.net/p/digioznetportal/wiki/Home/ Help Wanted: If you are a developer, and wish to join the project, please email us at support@digioz.com. -
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Python/FEniCS Examples
phase-field simulation and other examples with Python/FEniCS
The main goal of this project was developing phase-field simulations of lithium dendrite growth with FEniCS programmed in Python. The problem was based in the grand potential-based model of Zijian Hong and Venkatasubramanian Viswanathan (https://doi.org/10.1021/acsenergylett.8b01009) . Some simpler examples were developed before for a first approach with FEniCS: heat equation and combustion model. -
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Wuweido 3D CAD
Free 3D Mobile CAD
Wuweido is a professional 3D CAD on your phone or tablet. More than just a viewer, dozens of modeling tools are provided to create and modify 3D models in the most natural way. Wuweido allows you to import and export models in standard CAD format. Unlike Onshape™ on Cloud, Wuweido is running locally on your device and it's more like Rhino™ 3D on mobile. Wuweido is powered by OPEN CASCADE. OPEN CASCADE is an incredible powerful geometry kernel innovating quickly. Wuweido is inspired by... -
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The new version of MinimPy (MinimPy2) is available for download at: https://osdn.net/dl/minimpy2/MinimPy2.zip Please send your feedback about this new version to mahmood.saghaei@gmail.com (include MinimPy2 in the subject) ============================================================ MinimPy is a desktop application program for sequential allocation of subjects to treatment groups in clinical trials by using the method of minimization.
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Relative Overestimation VOP
VOP compression for MRI with overestimation control
...Prefer R2018b or newer. ***** This work is outdated and is here for reference purpose, only. ***** If you are looking for improved SAR-compression algorithms, visit: https://sourceforge.net/projects/enhanced-sar-compression/ -
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COHCAP
City of Hope CpG Island Analysis Pipeline
COHCAP (City of Hope CpG Island Analysis Pipeline, pronounced "co-cap") is an algorithm to analyze single-nucleotide resolution methylation data (Illumina 450k methylation array, targeted BS-Seq, etc.). Please note: 1) The SourceForge version of COHCAP is no longer being updated. Please see the GitHub version: https://github.com/cwarden45/COHCAP This was the source repository for the Bioconductor version, with some changes after the decision to only provide the code through GitHub. 2) In addition to the original NAR paper, please see the following links: Benchmarks: http://www.nature.com/protocolexchange/protocols/2965#/introduction Protocol Exchange Files: http://sourceforge.net/projects/cohcap/files/Protocol_Exchange_Example.zip 3) Custom Annotation Files (including EPIC Array): https://sourceforge.net/projects/cohcap/files/additional_Bioconductor_annotations.zip/download -
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Jacksum
a free cross platform checksum utility, supports 58+ hash algorithms
Development of this project has been moved to https://github.com/jonelo/jacksum. This site has been left for historical purposes ONLY, you find older Jacksum versions here. Please visit the GitHub site for current development. Jacksum 1.7.0 is a platform independent checksum utility (written entirely in Java) for computing and verifying (integrity check) checksums, CRC and hashes (fingerprints). -
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The most recent distribution of MyOpenLab can be downloaded from: myopenlab.org Follow us on Facebook as MyOpenLab Colombia https://www.facebook.com/myopenlabcolombia/ Subscribe, like and watch our MyOpenLab videos: https://www.youtube.com/channel/UCet6UPnaHKGjtbytJHIf2jQ Thanks!
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Combinatorial Game Suite
A computer algebra system for research in combinatorial game theory.
STARTING WITH VERSION 2.0, CGSUITE HAS MOVED TO GITHUB. The latest version can be found at the CGSuite homepage: https://www.cgsuite.org/ This page is preserved for archival purposes only and is no longer being maintained. -
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Jafama
A (Strict)FastMath class with 1e-15ish accuracy.
...It is a strictfp version of FastMath (and not a fast version of StrictMath): for a same version of this library, its methods always return a same result for same arguments, which might not be the case for FastMath depending on JIT or other JVM optimizations. Requires Java 5 or later. Available on Central since 2015/06/05. Also available on github since 2015/12/13: https://github.com/jeffhain/jafama -
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Rainflow
Fast rainflow counting written in C (C99)
...To take the residue into account, you may implement a custom method or use some predefined functions. [1] ASTM Standard E 1049, 1985 (2011). "Standard Practices for Cycle Counting in Fatigue Analysis", West Conshohocken, PA: ASTM International, 2011. [2] [https://community.plm.automation.siemens.com/t5/Testing-Knowledge-Base/Rainflow-Counting/ta-p/383093] -
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FidoCadJ
Simple and intuitive 2D vector drawing for electronics and not only.
...There is no netlist concept behind the drawings (so no simulation, and this is a choice) but this allows a great graphical flexibility and ease of use, making FidoCadJ the perfect tool for exchange sketches in forum and newsgroup discussions with a few clicks. Drawings can be exported in several graphic formats, such as pdf. Follow the development live on Twitter: https://twitter.com/davbucci -
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PHP-Module-Loader
Simple PHP Module Loader Source Code
...The $_GET Variable is now escaped. Now you can try out the new namegenerator module with the PHP-Guestbook or with the PHP-Module-Loader You can get PHP-Modul-Loader @ GitHub: https://github.com/masteraccurate/PHP-Modul-Loader
