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TM4 is a suite of applications for managing and analyzing microarray data. TM4 provides data storage and tracking, image analysis, normalization, data filtering, clustering and statistical analysis capabilities. Includes MADAM, Spotfinder, MIDAS, and MeV.
RISO: distributed, heterogeneous Bayesian belief networks. Belief network: a probability model defined on an acyclic directed graph; distributed: nodes can be on different hosts; and heterogeneous: allowing different types of conditional distributions.
JQuantity is a set of Java classes which enable developers to build scientific applications using quantities which are either exact or have known (bounded) errors. Quantities may include units, may be complex, non-scalar, etc. Extends java.math classes
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kin is a set of libraries and tools supporting meta-programming for engineering and technical computing applications. This JVM version of kin has been superseded by the stand-alone version being developed at http://purl.org/net/kin.
The project ASHWOOD has a goal to create an open source Java implementation
of graphs, graph related algorithms, and other useful concepts and algorithms
of CS, Applied Mathematics, and their applications.
Anthill is a framework to support the design, implementation and evaluation of P2P applications based on ideas such as multi-agent and evolutionary programming borrowed from the complex adaptive systems area.
This project is setup to maintain a set of Javaparty codes.
This includes Javaparty benchmarks and applications.
Javaparty (http://www.ipd.uka.de/JavaParty/) is a Java extension for easy and efficient parallel programming.
It does so by extending the
InfoML (see InfoML.org) is a standard for storing units of information--especially human thoughts--and making connections among them. This project is the first step toward building applications that implement new ways of manipulating information
Simulated annealing package written in Java using simplex downhill algorithm from Numerical Recipies in C++/FORTRAN/C
It is intended for use "behind the scenes" in applications, and it is optimised for ease of integration.
Completely standalone,
This projects intends to develop a complete distributed peer-to-peer environment
for running heuristic optimization, modelling, artificial life, etc applications. This involves a network engine, libraries and different user interfaces. All this in java.
FOPPS (feature oriented software product planning system) is a tool to help you to design your software product line. It provides different views (project plan, feature tree, ...) to maintain your core assets and applications.
This project comprises a collection of libraries and applications for the field of program analysis. The starting point is a type analysis for Java programs using Agesen's Cartesian Product Algorithm.
This JAVA library give the possibility to have a CANVAS object
in JAVA SWING graphical applications, including CANVAS tools such
as hand-tool, linker-tool, group-tool like VISIO(TM) application.
The library take advantage of Java2D packages to reach a
ľCode is a small Java API that provides a minimal set of primitives supporting mobility of code and state (i.e., Java classes and objects). ľCode can be used as a core for mobile agent systems, or to develop applications exploiting mobile code.
xmillum is a framework for visualizing document recognition results and for creating interactive document recognition applications. It can be freely extended using Java plugins.
A pure java user interface framework for building both web and gui applications, heavily inspired by the NeXT and OpenStep APIs. Includes clean-room implementations of parts of the WebObjects and JavaClient frameworks plus the Foundation classes.
JetSteam-3D is 3D GIS technology developed by Alchemedia. that allows the streaming of image,DEM,X3D,and WFS data to an applet. The javascript enabled applet allows the creation of 3D enabled WebGIS applications using typical AJAX techniques.
Cooperative effort to develop a Java-XML API and architecture to manage and share health concepts and processes eficiently. Includes a framework to develop healthcare applications (from PDA reminders to hospital information systems) quickly and easily.
SolarJ is a library of ephemeris routines, plotting routines, and applications for displaying features visible on the sun and planets in the solar system.
jASCOMPure is Java implementation of ASCOM framework (and later drivers). Everything is in Java, so it is usable on most of operating systems (with used rxtx API ported).Applications can access drivers directly (java) or through embeded JSP pages.
DEAL (Domain Extraction ALgorithm) is an application for domain analysis. Its main purpose is to extract domain information from existing Javaapplications and to create different kinds of models from the extracted data, including domain-specific languages.
SwarmNet is a framework for distributed computing applications.
Its goal is to make the creation of applications that compute complex calculations in distributed fashion as simple as possible.