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pyRREF is written in Python and it allows users to input a rectangular matrix to receive its reduced row echelon form. mimeTeX and PIL are currently used for output.
A web-based repository of plasmids and biobricks (see http://parts.mit.edu) plus related utility programs that support synthetic biology research. Note: This project is not updated any longer.
A completely re-written and much better version of this web server can be found here:
http://www.rotmic.org
FreeLIMS is a Laboratory Information Management System ( LIMS ). Manage samples; create sample types from methods & parameters; easily generate reports & certificates; fine tune user rights. FreeLIMS is Open Source and Free.
Goober is a customizable web-based package for microarray core labs to manage micorarray data and QC and biologist end users to easily analyze their data.
ASR-Builder provides an easy-to-use interface to the HTK toolkit, that allows users to build ASR systems. ASR-Builder provides a platform that performs house-keeping tasks when using HTK and also provides default training/testing/recognition scripts.
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DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV
PyDocumentary, is a class file that allows for a straight forward movement of information in a python simulation to a latex report. It is not a form of literate programming.
This program has been written having in mind to create an useful tool to evaluate the Motor Evoked Potentials (MEPs) generated by Transcranial Magnetic Stimulation (TMS) and recorded with the program "Signal" (version 2.xx).
This project is Java API to access Unicont Cardio Pager (http://unicont.ru/index2.html) device. This API allows access pager or get ECG data via serial port and through a modem line (using proprietary Windows ActiveX).
The EU Provenance project developed an architecture to document a data generating process in a distributed environment. The Python Client Side Library (CSL) enables the development of provenance-aware Python applications.
PyPCB is a Python package for working with PCB (http://pcb.sourceforge.net) files.
PyPCB can be used to create new useful tools, as footprint generators or library managers.
This is a Python interface for reading and writing Magellan GPS unit map files. There is also a command line tool for creating GPS maps from OpenStreetMap data.
primedb is a project that attempt to generation prime numbers fast and saving them to a database(Mysql or else) for prime research: finding large number of prime,prime factorization,Goldbach's conjecture,twin prime conjecture...
PyMaTi is a simple and easy to use GUI for numerical and scientific computing in Python. It surrounds well know packages NumPy and Matplotlib and provides possibility to immediately play with numerical python from intuitive user interface.
Repository of python interfaces to major scientific libraries, like HDF, netCDF and MPI. The interfaces are based on SWIG or PyRex, and should be portable to most Linux/Unix platforms.