Showing 6288 open source projects for "gnu linux"

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  • 1
    DuMuX

    DuMuX

    Porous-Media Simulator

    DuMuX, DUNE for multi-{phase, component, scale, physics, ...} flow and transport in porous media, is a free and open-source simulator for flow and transport processes in porous media. It is based on the Distributed and Unified Numerics Environment DUNE, dune-project.org. Its main intention is to provide a sustainable and consistent framework for the implementation and application of model concepts, constitutive relations, discretizations, and solvers. It has been successfully applied to CO2...
    Downloads: 0 This Week
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  • 2
    Flexbar

    Flexbar

    flexible barcode and adapter removal for sequencing platforms

    Flexbar moved to https://github.com/seqan/flexbar The program Flexbar processes high-throughput sequencing data efficiently. It demultiplexes barcoded runs and removes adapter sequences. Moreover, trimming and filtering features are provided. Flexbar supports next-generation sequencing data in fasta and fastq format, e.g. from the Illumina platform. Reference: Matthias Dodt, Johannes T. Roehr, Rina Ahmed, Christoph Dieterich: Flexbar — flexible barcode and adapter processing for...
    Downloads: 0 This Week
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  • 3
    Graphical tool for managing database of geocaches and waypoints, importing GPX files and exporting geocaches to many formats including GPX, POI, HTML and others.
    Downloads: 0 This Week
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  • 4
    QSapecNG
    QSapecNG is a Qt-based symbolic analysis program for linear analog circuits. In fact, it consists of two indipendently parts: the SapecNG framework engine, and the application gui QSapecNG.
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    Downloads: 8 This Week
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    Madeline 2.0 Pedigree Drawing Engine

    Madeline 2.0 Pedigree Drawing Engine (PDE)

    The Madeline 2.0 Pedigree Drawing Engine is a pedigree drawing program designed to handle large and complex pedigrees with an emphasis on readability and aesthetics. PLEASE NOTE THAT as of 2015.09.30, the most current Madeline source code tree is now maintained on GITHUB at https://github.com/piratical/Madeline_2.0_PDE .
    Downloads: 0 This Week
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  • 6
    Program jobman (Job Manager) glues executables written in different languages according to a given flow. The program can run executables with arguments in parallel (multiprocessed) or in loop or in any combination of them.
    Downloads: 0 This Week
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  • 7

    mwetoolkit

    THIS PROJECT MIGRATED TO https://gitlab.com/mwetoolkit/mwetoolkit3/

    THIS PROJECT MIGRATED TO https://gitlab.com/mwetoolkit/mwetoolkit3/ The Multiword Expressions toolkit aids in the automatic identification and extraction of multiword units in running text. These include idioms (kick the bucket), noun compounds (cable car), phrasal verbs (take off, give up), etc. Even though it focuses on multiword expresisons, the framework is quite complete and can also be useful in any corpus-based study in computational linguistics. The mwetoolkit can be...
    Downloads: 1 This Week
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  • 8
    CANUSB Library written in C#
    This is a C# library dedicated for using with a www.canusb.com device Full notes: See ReadMe.txt Summary The LAWICEL DLL is 'unmanaged code' and was not designed for use by C#/VB/Mono http://en.wikipedia.org/wiki/Managed_code If you wish to call 'unmanaged code' from 'managed code', you need to use a 'C# wrapper' to access the DLL. This wrapper uses 'PInvoke' (like peek/poke) to 'martial' calls from managed to unmanaged code. It sounds complicated, and it is. IT IS ALSO TOTALLY...
    Downloads: 2 This Week
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  • 9
    ToricCam

    ToricCam

    Virtual Camera representation using the Toric Space

    ToricCam is a C++ library I have developped for my research. It provides a starting point to using the Toric Space viewpoint representation [Lino & Christie, SIGGRAPH 2015]. It also implements our preliminary work published at SCA 2012. The library is released under the GNU General Public License version 3. For researchers who want to use the library for their work, please quote the papers as follows: + Efficient Composition for Virtual Camera Control. C. Lino, M. Christie. In ACM...
    Downloads: 0 This Week
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  • 10
    SECD

    SECD

    Simulador Educacional de Circuitos Digitales

    Educational Digital Circuits Simulator . It tries to be simple for an educational environment. Simulador Educacional de Circuitos Digitales. Intenta tener un uso muy sencillo para ser usado en entornos educacionales.
    Downloads: 4 This Week
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  • 11

    PNGwriter

    Easy plotting of images pixel by pixel!

    Frustrated because you want to output a high-quality image from your C++ program but haven't found an easy, direct and fast way? Try PNGwriter. Written with scientific simulations in mind, PNGwriter allows you to plot to a PNG image pixel by pixel. * * *README* * * This is the last PNGwriter release that will be hosted on SourceForge.net. Please use the following site: https://github.com/pngwriter/pngwriter/releases to find all versions of PNGwriter including and later than...
    Downloads: 0 This Week
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  • 12

    bsclient

    An interactive FTP-like command-line BaseSpace download client

    bsclient is an interactive text-based client for browsing and downloading files from Illumina BaseSpace. It has a simple interface simliar to FTP and can be used to easily download files onto a remote server or in any situation when the web-based interface is not accessible or desirable. Please note that current development on this project has moved to GitHub: https://github.com/jvolkening/bsclient
    Downloads: 0 This Week
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  • 13

    S2O

    Converting IBM SPSS files to CDISC ODM

    This tool can be used to convert data collections based on IBM SPSS Statistics to the data standard for definition and exchange of clinical trials: CDISC ODM (Operational Data Model). Possible use-cases: - A project is running out of funding and scientific data collection should be performed in free available/open-source data capture systems - Advantages of reliable EDC systems like: Data security (role/right management), backup infrastructure, support of the entire clinical trial...
    Downloads: 0 This Week
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  • 14
    A python package for simulation of deterministic and stochastic dynamical systems using cuda.
    Downloads: 0 This Week
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  • 15

    jAgg

    jAgg - Java Aggregation Operations

    jAgg is a Java 5.0 API that supports “group by” operations on Lists of Java objects: aggregate operations such as count, sum, max, min, avg, and many more. It supports Super Aggregation: Rollups, Cube, and Grouping Sets. It supports analytic operations such as lag/lead and row number and more. It also allows custom aggregate and analytic operations.
    Downloads: 0 This Week
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  • 16

    swathTUNER

    Software tool for optimizing data-independent acquisition methods

    SwathTUNER combines usability and flexibility for the selection of different SWATH data acquisition strategies to address the requirements of multiple experimental conditions. It can be used for any acquisition instrument, including FT-based analyzers, where the same principles with respect to variable precursor isolation windows apply. Fixed and variable windows based on equalizing the distribution of either the precursor ions or the total ion current within each window can be created.
    Downloads: 0 This Week
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  • 17
    This is a parser in Java for Lisp S-expressions. An S-expression or sexp (for symbolic expression) is a convention for representing data using parentheses.
    Downloads: 0 This Week
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  • 18
    JConvert is a free unit conversion program that has a friendly user interface and can also be used with external applications. Conversions can be modified and/or added easily. Supports multiple languages. Downloads and runs in seconds! Try it now.
    Downloads: 2 This Week
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  • 19
    aisconvert
    Toolkit for processing genetic data. Currently supports (command-line): Half-IBD (Identity by descent) aka HIRs - between 2 or any number of files (in distances and cM); RAW2PED, PED2RAW conversions; regions of homozygousity and other converters.
    Downloads: 0 This Week
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  • 20
    vcftools
    A set of tools for working with VCF files, such as those generated by the 1000 Genomes Project. This project is migrating to github: https://vcftools.github.io/
    Downloads: 23 This Week
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  • 21
    GKK - GPX KurvenKoeffizientenBerechner. Berechnet aus einer vorliegenden GPX-Datei die Summe der Kurven pro km. Kommandozeilenbasierte Anwendung.
    Downloads: 0 This Week
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  • 22
    The Java Data Mining Package (JDMP) is a library that provides methods for analyzing data with the help of machine learning algorithms (e.g. clustering, classification, graphical models, neural networks, Bayesian networks, text processing, optimization).
    Downloads: 0 This Week
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  • 23

    LDhat

    Estimate Recombination Rates from Population Genetic Data

    LDhat is a package written in the C language for the analysis of recombination rates from population genetic data. This package has migrated to github: https://github.com/auton1/LDhat
    Downloads: 1 This Week
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  • 24
    The Protein Similarity Network

    The Protein Similarity Network

    Human protein similarity network used to predict drug safety.

    This is the protein similarity network - PSIN. Here, the nodes are human proteins and they are linked only if they share considerable sequence similarity. We found that this network is particularly useful to distinguish approved from problematic drug-targets. Here you also find the complete set of programs and datasets we used for this purpose. Free to help further test and develop this project. Your help and expertise are much appreciated ! If you have any questions, please do...
    Downloads: 0 This Week
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  • 25
    Mutation Mapper
    PLEASE NOTE: THIS PROJECT PAGE WILL NO LONGER BE UPDATED - PLEASE USE THE GITHUB PAGE (https://github.com/gantzgraf/MutationMapper) TO FIND THE LATEST RELEASE (https://github.com/gantzgraf/MutationMapper/releases/latest). Predict functional consequences of mutations identified from sanger sequencing.
    Downloads: 0 This Week
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