Search Results for "file python" - Page 5

metaProt is a python pipeline to analyze and extract data from protein sequences found in metagenomic projects. It integrates several existing tools (HMMer, Pepstats, Blast...) to be used against custom databases. Please, read the README.txt file to find more about this.

CAD Scripts project is designed to automate the work of CAD Softwares. Here you will find scripts/softwares which help to do tasks easily. E.g- Specify coordinates of figures in input file and get output dxf file without actually drawing anything.

Command-line tool to calculate error propagation. Generates the error formulas and applies them to the data.

A command line based weather reporting tool written in python. View current weather conditions, extended day forecasts, and station id lookups as reported from weather.com. Customize output via weathergetrc configuration file. Platform independent.

This program was written to dimonstrate errors in transmission for a presentation on Claude Shannon's Noisy Channel Coding Theorem. It takes an input file, the probability of a bit being flipped, and, if specified, the size of the header of the file. The program was intended to take monochrome bitmap files as input, so that each bit refers to a pixel in the image and thus, it would be easy to see errors in the output file, as some of the pixels would be flipped; however, it will work on any...

A GUI program to create the plasmid database forms for BGME lab. This program presents user with a data entry form for entering plasmid information and automatically converts DNA sequence to protein, aligns it, and creates text output file.

A Step Closer to a Fully Gui ATLAS .log Converter A Gui .in Editor to be Used by ATLAS .log awk converter

PLAtypus's goal is to give people with poor communications skills an opportunity to learn and improve. With the guidance of a tutor, people will be able to learn new signs, sounds or icons and associate them with real life concepts that will, hopefully, help them to better express they needs.

A GPR processer and viewer written in Python!

Molecular Interaction Potential Generator MIPGEN is a python program that will calculate Molecular Interaction Potential grids over a given molecule, that could be either a protein or a small organic compound (drug). The output will be a series of grids with DX format (*.dx) that the user will be able to visualize using any Molecular visualization program like VMD, PyMol, Chimera... For more information on dependencies and usage, please read the Documentation. Users are welcome...

A simple and still alpha Python script to extract features out of an OpenStreetMap (OSM) file into basic Keyhole markup language (KML)

PyAnnotation is a Python Library to access and manipulate linguistically annotated corpus files. Supported file formats are Kura XML, Elan XML and Toolbox files. A Corpus Reader API is provided to support statistical analysis within the NLTK.

Electronic Components Database, is a customizable database for electronic components thought for electronic hobbyist.

Volumetric file viewer for the human brain. Easy, powerful and flexible fMRI/MRI brain research and clinical neuro-surgery tool. Using state of the art open VTK 3D library, the proven Qt GUI toolkit, coded in Python.

mmView is the web based viewer of macromolecular Crystallographic Information File (mmCIF) format. Online ready-to-use version is available at http://ich.vscht.cz/~cechp/mmcif/ or http://ich.vscht.cz/projects/mmview/

DTMF detector library and/or application that reads in the specified audio file and returns/outputs whether DTMF detected and/or list of detected digits. May have GUI and command line interfaces.

The Dragon Fire compiler takes a new, 21st century, look at the Dragon (i.e. Dragon Book). No longer impenetrable to the programmer, this compiler is open and available to them. You control the Dragon, and get Dragon insight into your programs.

Metmask has moved to github http://github.com/hredestig/metmask Metmask is a tool written in python for managing chemical identifiers for metabolomics experiments. It can incorporate identifiers from local textfiles, several online databases, query PubChem and record all found associations in a local sqlite database.

ATpy (Astronomical Tables in Python) is a Python module aimed at dealing with tables of astronomical data with a common API. To date, the following formats are supported: FITS, VO, and IPAC tables, and SQLite, MySQL, and PostgreSQL databases

--UPDATE-- New Version is now integrated in the official PyMOL plugin repository! --UPDATE-- The BNI (Beyond Normal Interaction)- Tools is a plug in for the PyMOL molecular visualization system which adds additional functionalities and presets to the PyMOL GUI and also adds useful extended commands.

In knight tour (kt) problem every chess square is visited exactly once using knight moves. In this game some knight moves already made and we have an incomplete kt. The object is to complete the kt by guessing missing moves.

Transana is a cross-platform tool for the transcription and qualitative analysis of audio and video data. It also provides the ability to identify and organize analytically interesting portions of videos, as well as attach keywords to those video clips.

A collection of tools for working with the comparative data analysis ontology including import/export facilities for common phylogenetic file formats, and also a triple-store framework.

A python API for Google's KML file. Added doc Added description to PlaceMark

Little Cohesion Helper (LCH), alias TraglWeck, semi-automates the annotation of lexical-cohesion in a given text. Input is a raw text file and this software generates a bunch of XML files which can be used with MMAX2.