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SaskPrimerFS is a pipeline for designing gene family specific PCR primers. SaskPrimerFS is designed to infer intronic regions of a target species and design for them by utilizing DNA sequence information from a reference organism.
T-Rex (Trainable Relation Extraction) is a highly configurable machine learning-based Information Extraction from Text framework, which includes tools for document classification, entity extraction and relation extraction.
sbmlop is a command-line utility to create, view and manipulate SBML (the Systems Biology Markup Language). It is ideally suited for operating on large batches of SBML files, and can extract and modify information using regular expressions.
This project is a GUI or commandline interface for converting US measurements to metric. A simple calculator has been added for help with small measurements.
Combean is a Java framework for mathematical structures and optimization algorithms. Through a set of Java interfaces and JavaBeans-based config, Combean glues optimization codes together - leading to more interoperable, adaptable and flexible solutions.
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This set of C++ classes allows the user to load data from custom Affymetrix microarrays. This is a good platform for new method development and it contains several common normalization algorithms.
GRAMophone is an algorithmic generator of music composition. The music is generated using two kinds of formal grammar: Chomsky’s grammar for TOP DOWN approach to the composition and a reduced version of Lindenmayer grammar for BOTTOM UP approach.
x2svg is software to graphically lay out files like XML Schema, DTDs and Java property files as scalable vector graphics (SVG). Diagrams can be converted into PDF, PNG, TIF and EPS files directly from within x2svg. A simple GUI and ant integration exist.
As of Jan 2009, this project and NanoStack 1.x are no longer being actively developed or maintained. Instead there is an effort to add support for Sensinode/cc2430 hardware for the Contiki OS. http://www.sics.se/contiki/
NGrid is a transparent C# .Net/mono grid computing model. NGrid abstracts the burden of the grid into a simple multithread and garbage collected programming model. NGrid is designed to carry computationally intensive tasks over multiple machines.
a free cross platform calculator for calculating BIG numbers
BigAl is a free open source and platform independent software for calculating really BIG numbers. It supports not only standard arithmetic, but also exact period determination, predefined factorials, fibonacci with seeds, factorization, nth root, etc
PSRPOP - a package to simulate radio pulsar populations has been undergoing
development and use since 2003. The package is used to infer the underlying
properties of pulsars and help make predictions for future surveys.
SIGPROC - a collection of signal processing programs developed for
pulsar data reduction has been developed and maintained since 1999.
The package is used to search for and visualize the presence of
pulsed signals in noisy radio astronomy data.
Bayesian Surprise Matlab toolkit is a basic toolkit for computing Bayesian surprise values given a large set of input samples. It is also useful as way of exploring surprise theory. For more information see also: http://ilab.usc.edu/