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Repository of python interfaces to major scientific libraries, like HDF, netCDF and MPI. The interfaces are based on SWIG or PyRex, and should be portable to most Linux/Unix platforms.
Python extension module based on C-XSC (C++ Language eXtensions for Scientific Computation) and the associated Toolbox. Provides a real and complex interval arithmetic with verified results for numerical applications.
MRCWA - Multilayer Rigorous Coupled Wave Analysis is a fast, flexible optical grating solver. It calculates an exact solution to the Maxwell equations for the diffraction of light from an optical grating with arbitrary profile and materials.
Free HyperSim is a generic simulator (simulink like) platform adapted for shared projects. Components (icons) are plugins (python code, batch or executable files) which can be shared between users.
pygr is a bioinformatics toolkit for sequence analysis and comparative genomics. pygr is highly scalable (e.g. one can easily query multi-genome alignments) and easy to use. Please see our new project page and wiki at http://code.google.com/p/pygr.
TransimsGui and makeTransims allow users to automatically generate triptables, timetables and vehicle files, edit individual control files, create batch files for transims feedback processes, run exe-control file pairs and run batch files.
Simple application for plotting/processing 1D NMR data. Available for Linux, OS X and Windows and currently reads most Varian and Bruker data. Is capable of producing publication quality plots and exporting data to acsii format.
The Serial Data Acquisition is a lightweight data acquisition system able to parse a vast majority of mostly unidirectional streams. Results are saved in a SQLite DB and accessible over XML-RPC or plain HTTP. Its design is modular and easily extendable.
Processes boolean functions which can be provided either as a list of 0s and 1s or which can be provided as a formula in first-order logic (using disjunctive or conjunctive normal forms). Internally the Quine McCluskey algorithm is used.
PepT-IDE is a protein analysis tool that is used for multiple sequence alignment, 3D visualization and displaying protein contact maps for protein sequences and structures. It also has feedback communication between the different views of the protein.
QMcBeaver is an object-oriented program to perform Quantum Monte Carlo calculations on atoms and molecules. It is designed to be easy to modify, allowing new ideas to be quickly implemented.
This is a Python package designed to process Penn Treebank Release II-style combined trees (.mrg files) into useful objects for tree traversal, feature extraction, and statistical analysis. For more information, go to http://mrgutils.sourceforge.net
A 3D robots simulator written in python. Uses ODE physics and OpenGL/Inventor graphics. A differential wheels robot is provided. There is no user interface but the code is small and is intended to be easily extended for your simulations.
The Model Interaction Environment for Neuroscience provides tools for development, searching, editing, execution, and visualization of biophysical models, abstract mathematical models, and experimental protocols used in neuroscience research.