Search Results for "java projects on linux" - Page 37
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Showing 3935 open source projects for "java projects on linux"
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OpenFlux2 is an extended version of OpenFLUX (https://sourceforge.net/projects/openflux/) - the modern MATLAB-based modelling software for 13C flux analysis (MFA). The following features were implemented in OpenFLUX2, which were not present in original software: integrated support for calculation and analysis of parallel labeling experiments (PLE), extended statistical analysis of parameter estimation results, calculation of fluxes and measurements correlation, structural identifiability...
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cnvCapSeq
detecting & genotyping CNV in long-range targeted resequencing.
cvnCapSeq is a set of Java-based command-line tools for detecting and genotyping copy number variation (CNV) in targeted resequencing experiments of large contiguous genomic regions. -
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jmathstudio - Java Image/Signal toolkit
Java toolkit for discrete Image and Signal processing.
JMathStudio is a Java based digital image and signal processing toolkit/library. It is simple to use, portable, light (~300 Kb), extendable and free. Full source code available at https://github.com/bhavyaajani/jmathstudio Android compatible JMathStudio is available @ https://sourceforge.net/projects/jmathstudio-android/ -
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This is a project which aims to create a theorical model for trajectories of airsoft bb's, and to compute them.
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OpenNLP provides the organizational structure for coordinating several different projects which approach some aspect of Natural Language Processing. OpenNLP also defines a set of Java interfaces and implements some basic infrastructure for NLP compon
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TUIT
Taxonomic Unit Identification Tool
For the installation instructions please see Wiki page: https://sourceforge.net/p/tuit/wiki/ IMPORTANT: since version 1.0.4.0 TUIT allows to select RDP-like formatted output to improve out of the box compatability with tools, that assume RDP-formatted input. A new field has been added to the properties.xml, please make sure to update it to contain <OutputFormat format="tuit"/> or <OutputFormat format="rdp"/> in the <BLASTNParameters> section. Read our paper in Biotechniques:... -
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Research Master
wxpython research organization tool with LaTeX flashcards
ResearchMaster is a tool that you can trust to help with organization, multitasking, and research. ResearchMaster provides a place to capture your fleeting thoughts and ideas, and it allows you to hit-the-ground-running on projects. -
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qPMerge
phospho-peptide merge tools for Galaxy
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The aim of the cardiac atlas project is to establish a structural and functional atlas of the heart. This project is funded by the NIH grant and led by the University of Auckland, New Zealand.
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Belief Merger
A simple Belief Merging Prototype
Belief merging aims at combining several pieces of (possibly inconsistent) information coming from different sources. The goal is to produce a single consistent set of information, trying to keep the most of the information of the sources. A belief merging operator is the responsible for making the belief merging. With this tool you can compare the ΔΣ, ΔGMax and the Δps (PS-Merge) operators. -
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HomSI
Homozygous Stretch Identifier from next-generation sequencing data
In consanguineous families, as a result of inheriting the same genomic segments through both parents, the individuals have stretches of their genomes that are homozygous. This situation leads to the prevalence of recessive diseases among the members of these families. Homozygosity mapping is based on this observation and several recessive disease genes have been discovered with the help of this technique in consanguineous families. The researchers typically use SNP arrays to determine the... -
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ALTER is a web-based tool to transform between multiple sequence alignment formats. ALTER focuses on the specifications of mainstream alignment and analysis programs rather than on the conversion among more or less specific formats.
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Bibtex Import
Imports bibtex references from MathSciNet
Uses MathSciNet to search for bibtex references. The matching references can then be edited and added to a local file. For information on how to use this software please consult the wiki. Requires a MathSciNet subscription. -
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A collection of projects I have developed in the past years. It contains: - a tool to compute height and angle of objects above horizon - a proof of concept of DFT and DWT to reduce audio files - a quantitative library with OOorg interface for Calc
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The JAccumulator package brings the convenient type conversion and ad hoc composition capabilities of Javascript to Java programming structures. JAccumulator is dependent upon the Jupperware (http://jupperware.sf.net) to provide Javascript-like associative list capabilities and the convenience of easy hierarchical construction.
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grepp
An ultimate text-analysing tool
A command line tool for text file analyis, filtering, splitting and reporting. Runs under Java (1.5+), supports plugins written in Groovy. Has nix and win batch files in distributions. -
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AeroDataBase
Aircraft aerodynamic database
A collection of aerodynamic data in HDF format. The data is used in the semiempirical models of aircraft aerodynamic coefficients. Reference: Aircraft Dynamics: From Modeling to Simulation Marcello R. Napolitano, Wiley, 2012. http://eu.wiley.com/WileyCDA/WileyTitle/productCd-EHEP002021.html -
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µic is a modelling engine for simulations of microstructural development. It takes localied behaviours as input from the user and integrates the global behaviour, with the calculation of all interactions as required by the application.
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GPSInfo
Apl. móvil de Información georeferenciada + visor 3D escritorio
Plataforma de creación de información georeferenciada desde dispositivo móvil. Aplicación de escritorio 3D para explotación de la información. NEW: actualizada apk para soporte hasta Android 4.4 KitKat -
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Biogranat (Molecular Biology Graph Visualisation and Analysis Tool) is a new tool for the analysis and visualisation of large datasets.
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NeISS (National e-Infrastructure for Social Simulation) is a JISC funded project which will produce a platform for social simulation. Project Web site: http://www.neiss.org.uk
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dna-bison
Bisulfite alignment On Nodes of a cluster
Bison allows users with access to a computer cluster to rapidly align whole-genome bisulfite sequencing or RRBS reads. It can align both directional and non-directional libraries and uses bowtie2. Multiple compute nodes are not absolutely required, but will make the alignment process faster. Further details available on the Wiki page. Help also available on SEQanswers (http://seqanswers.com/forums/showthread.php?t=31314) or by creating a ticket here. You can now track the... -
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VSViewer3D
3D Virtual Screening Viewer
This project is an interactive viewer for 3D virtual screening data.