Showing 1454 open source projects for "python-kinterbasdb"

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  • 1

    PyDQP

    Distributed QP Solver in Python

    PyDQP implementes 11 different dual decomposition schemes, both first and second order, in order to solve quadratic programs in a distributed fashion.
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  • 2

    Genetic data converter

    Convert genetic data for hapmixmap software

    Genetic data converter, for hapmap.org and hapmixmap data formats. Reads data in tabular format and writes in hapmixmap format. It's possible to add extensions to output different data formats.
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  • 3
    This project develops a simple, fast and easy to use Python graph library using NumPy, Scipy and PySparse.
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  • 4
    iTree: scalable multithreaded phylogenomic pipeline
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    EASER

    EASER

    Ensembl Easy Sequence Retriever

    Maldonado E, Khan I, Philip S, Vasconcelos V, Antunes A (2013) EASER: Ensembl Easy Sequence Retriever. Evolutionary Bioinformatics, 9:487-490. doi: https://doi.org/10.4137/EBO.S11335.
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  • 6

    Physic Research Tools

    Python, Physics, PyQt, Software, Data adquisition, Spectroscopy, UV

    Como técnico en informática en un Instituto de Física con el tiempo surgió la necesidad de tener que crear distintas piezas de software para ir resolviendo situaciones diarias. En este proyecto iré agregando pequeños programas en Python 2.7 que voy escribiendo para dar soluciones a algunos de los problemas que surgen día a día en el laboratorio, como ser comunicación con algunos dispositivos o rutinas para ordenar o modificar datos de forma recursiva algunos cálculos matemáticos, creación de gráficas etc. La finalidad principal del proyecto es poder poner a disposición de aquel que lo necesite mi trabajo tanto dentro del Instituto donde trabajo como fuera del mismo. ...
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  • 7

    SunlightDPD

    Open source codes related to dissipative particle dynamics

    SunlightDPD provides a home for open source codes related to the dissipative particle dynamics (DPD) simulation method. Currently the file release contains the HNC integral equation code.
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  • 8

    tagfs

    Tag based file manager CLI

    A Tag based file management system. Command line interface. User can add tags for files (individually or for the folder). Allows search by tags.
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  • 9
    The Generic Graphics Toolkit is a library of generic programming primitives that allow applications to be written that adapt to whatever underlying graphics system the developer is using.
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    Downloads: 8 This Week
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  • 10
    pyPENELOPE
    An application programming (API) and graphical user interface (GUI) to facilitate the use of PENELOPE's program PENEPMA.
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    Downloads: 24 This Week
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  • 11
    A IC/MEMS layout editor. Features: all angle, font generator, macros, boolean operations, design rule checker, supported formats:Calma GDSII, OASIS (Open Artwork System Interchange Standard), OpenAccess, DXF, CIF (Caltech Intermediate Form), ...
    Downloads: 2 This Week
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  • 12
    MoDAVE aims at providing data analysis and visualization extensions to Mosaic datasets, including cubed sphere data, to the Climate Data Analysis Tools (CDATA) in particular.
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  • 13

    BriCS

    SaaS for running simulation models in the cloud

    The Bristol Cloud Service simulation runner is a cloud computing Software as a Service designed to enable users to quickly launch simulation code on Amazon AWS' Elastic Compute Cloud (EC2). BRiCS is written in Python using the Django framework and interacts with EC2 using the boto API. BriCS enables multiple simulation runs to be launched in parallel from a web browser. Model configuration (parameters) files are uploaded via the browser and results files are downloadable on completion. BriCS enables researchers with software simulation models to access the rapid scale out opportunities of the cloud. ...
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  • 14
    Donatus is an on-going project consisting of Python, NLTK-based tools and grammars for deep parsing and syntactical annotation of Brazilian Portuguese corpora. It includes a user-friendly graphical user interface for building syntactic parsers with the NLTK, providing some additional functionalities.
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  • 15
    DeDAY

    DeDAY

    MLE survival analysis: Gompertz, Weibull, Logistic and mixed morality.

    DeDAY (Demography Data Analyses) is a tool of analyzing demography data. It supports Gompertz, Weibull and Logistic distributions. DeDay also supports mixed mortality models based on these distribution such as the Gompertz-Makeham distribution. Distributions such as Gompertz describes only age-dependent mortality, which increases over time. Mixed mortality models, such as in Gompertz-Makeham distribution, consider a more general case where mortality is consist of both age-dependent and...
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  • 16

    statspy

    Python module for statistics built on top of NumPy/SciPy

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  • 17

    MSTParser

    MSTParser is a non-projective dependency parser that searches for maxi

    MSTParser is a non-projective dependency parser that searches for maximum spanning trees over directed graphs. Models of dependency structure are based on large-margin discriminative training methods. Projective parsing is also supported. mstparser 0.5.1 is now available via Maven Central. If you use Maven as your build tool, then you can add it as a dependency in your pom.xml file: <dependency> <groupId>net.sourceforge.mstparser</groupId> <artifactId>mstparser</artifactId> ...
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  • 18
    LibreEngineering
    LibreEngineering - suite of instrumentation, electrical, mechanical, process engineering calculation and design programs and other tools. Licensed under GPL3. Written in Python with Qt toolkit.
    Downloads: 3 This Week
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  • 19
    This is the former home of pyecm, which has now been moved to github: https://github.com/martingkelly/pyecm Pyecm factors large integers (up to 50 digits) using the Elliptic Curve Method (ECM), a fast factoring algorithm.
    Downloads: 0 This Week
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  • 20

    PolyCTLDesigner

    Python scripts for designing polyepitope T-cell immunogens

    Given the peptides (T-cell epitopes) PolyCTLDesigner selects flanking sequences to optimize TAP-binding and joins resulting oligopeptides into a polyepitope in a way providing efficient liberation of potential epitopes by proteasomal and/or immunoproteasomal processing and minimizing the number of junctional epitopes. For constructing polyepitopes PolyCTLDesigner utilizes known amino acid patterns of proteasome cleavage and TAP-binding specificity. PolyCTLDesigner is also able to choose...
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  • 21
    Math tools in Python to tackle down problems in Operational Research fields. Comes with a Django based web interface to allow remote access to complex simulation means.
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  • 22

    X-Freq

    X-Ray Reflectivity Frequency Analysis

    Analyze the thicknesses of a sample from an x-ray reflectivity dataset using Fourier Transform techniques.
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  • 23

    Webapp

    A web interface to the SnowyOwl gene prediction pipeline

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  • 24

    RASPnmr

    Protein NMR backbone resonance assignment

    RASP uses structure-based chemical shift predictions to solve the backbone resonance assignment problem in protein NMR spectroscopy. This enables rapid determination of highly accurate assignments on the basis of minimal experimental datasets, even for spectroscopically challenging proteins. RASP takes as input spin systems assembled on the basis of an arbitrary set of conventional triple-resonance NMR experiments. Uniquely, RASP is capable of extensive assignments even in the abscence of...
    Downloads: 1 This Week
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  • 25

    nwbas2ecce

    nwbas2ecce converts nwchem basis set files to the ECCE format

    The basis sets included with ECCE have -- as far as I can tell -- not been updated for many years. In addition, many of the newer basis sets that come with nwchem aren't included, such as the def2- series. nwbas2ecce is a python script that aims to automate as much as possible of the conversion process of a nwchem basis set file into the files necessary for ECCE to included it in the basis set tool. The process isn't completely automatic, but I also believe that it shouldn't be to avoid stuff-ups -- however, the amount of manual editing is kept to a minimum. ...
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