Showing 1359 open source projects for "sql command line"

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  • 1
    Tools for mass spectrometry, especially for protein mass spectrometry and proteomics: Quantification tools, converters for Applied Biosystems (Q Star and Q Trap), calculation of in-silico fragmentation spectra, converter for Mascot result files
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  • 2
    Bifurcation Analysis Library
    A C++ library for the computation of bifurcation diagrams: it provides tools for the integration of systems of ODEs that depend on parameters. A Python interface is included.
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  • 3
    Dutch sentiment analysis engine

    Dutch sentiment analysis engine

    Een module om de sentiment van een stuk Nederlandse tekst to bepalen

    This application was developed by Incentro to satisfy requests by clients for a sentiment analyser for the Dutch language. It is currently in it's alpha stage and we expect to have a beta release by November 2012. If you would like to help with the development or testing of this product please contact us at +31[0]15 76 40 750 - of info {at} incentro.com. Deze applicatie is ontwikkeld door Incentro om te voldoen aan klantaanvragen voor een sentimentanalyse module voor de Nederlandse taal....
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  • 4
    The pySpec project is a set of data analysis routines written in python for analysis of x-ray diffraction data produced by the SPEC X-Ray Diffraction and Data Acquisition software. This repo has moved to : https://github.com/stuwilkins/pyspec
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  • 5
    Tools for analysing the degree of folding in the human brain
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  • 6

    SPSens

    Stochastic parameter sensitivity analysis for chemical networks

    ...The package includes several example networks which can be easily modified for other networks. Serial and parallel MPI implementations can be built and called from the command line. The serial implementation of the package can also be called from Matlab via the MEX interface with limited functionality. It supports many user specified options, including the use of antithetic sampling that can be used in some cases to increase efficiency.
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  • 7
    Gnuplot2TightPDF

    Gnuplot2TightPDF

    Python script that produces a tight pdf from gnuplot with psfrag text.

    Gnuplot is a widely known script based free plotting program. This script (gpt2pdf) makes it possible to generate pdf figures with 2D LaTeX maths on top of it by including psfrag replacements directly as comments in the gnuplot file. The resulting pdf file doesn't contain any extra white-spaces around it and as such can be comfortably included in any (pdf)LaTeX file. Requires: Python 2.4 - 2.7, LaTeX and the system commands ps2epsi and epstopdf which comes in with any ghostscript...
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  • 8
    ipmems

    ipmems

    Real-time data acquisition and visualization software

    Cross-platform data acquisition and visualization software with an embedded HTTP-server, binary protocol parsing library, protocol emulation server, remote secure administration server, embedded Groovy scripting facilities and HMI (SCADA) visualization module.
    Downloads: 0 This Week
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  • 9

    Arachne

    Exploration of a Hierarchical+Functional Approach To Data Organization

    This is dedicated to development of a small class for organizing data in both a traditional parent<->child hierarchy and by the functions used to generate child data nodes from parent data. The core of the project is in the class definitions contained within arachne.py, a demonstration of how this method of arranging data can be used to solve a relatively interesting problem may be found in test.py
    Downloads: 0 This Week
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  • 10
    CoNIFER

    CoNIFER

    Homepage for CoNIFER (Copy Number Inference From Exome Reads)

    CoNIFER uses exome sequencing data to find copy number variants (CNVs) and genotype the copy-number of duplicated genes.
    Downloads: 1 This Week
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  • 11
    GeneSim is a code generator for dynamic systems: it takes an XML description of the system and produces the code that executes it. The typical usage of GeneSim is to generate simulators of engineering systems.
    Downloads: 0 This Week
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  • 12
    predictOP
    A C++ class to enable prediction of the reflectance spectrum of two overprinted inks (i.e., solids), using the inverted Viggiano trapping equation.
    Downloads: 0 This Week
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  • 13
    Javamony

    Javamony

    A Student's Approach to the Phylogenetic Problem

    Based on the not-so-successful Pysimony (https://sourceforge.net/projects/pysimony/), the same determined student takes another go at the phylogenetic problem. Javamony is invoked as follows: java -jar Javamony.jar [input.fasta] [random / stepwise (starting tree)] [# of bootstraps] [outgroup taxon #1] [outgroup taxon #2] ... Not meant as a competitive phylogenetic inference program, Javamony is an opportunity for me to acquire the Java language while learning to address and solve...
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  • 14

    colonyzer image analysis software

    Image analysis estimating cell density in arrayed microbial cultures

    Image analysis software for quantification of cell density in microbial cultures (e.g. S. cerevisiae) growing on solid agar plates. Specialises in detection of extremely low cell densities. Forms part of the Quantitative Fitness Analysis (QFA) workflow: http://research.ncl.ac.uk/qfa/ Suitable for high-throughput, genome-wide analysis of culture libraries when combined with the following qfa R package: http://qfa.r-forge.r-project.org/ This is the version presented, used and...
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  • 15

    qpure

    Tool to assess tumour sample cellularity from SNP arrays.

    qpure is an R script that uses copy-number and B allele frequency data from Illumina Omni 1M genotyping (SNP) arrays to assess the tumour content (cellularity) of cancer tissue samples.
    Downloads: 0 This Week
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  • 16
    Prediction of MHC class I- and MHC class II-restricted T-cell epitopes. Prediction of proteasomal/immunoproteasomal processing of antigens. Prediction of peptide-TAP binding.
    Downloads: 0 This Week
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  • 17

    fw2csv

    Convert data file from fixed width format table to CSV

    Fixed width data files are probably the most annoying data to import into database. This utility allows user to insert user-defined column separators into user-defided positions of flat file table given in fixed-width format. I am using this utility to import astronomical catalogs provided as flat tables at CDS ftp-server into postgresql; Build: $ make all [cc={icc|gcc}] Install: $ make install [prefix=/path/to/your/bin/directory] Example of usage: $ gzip -dc table.dat.gz |...
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  • 18

    Pysimony

    A Pythonic Implementation of Parsimony Inference of Phylogeny

    UPDATE: After some bug fixes, I've ditched Pysimony for Javamony: https://sourceforge.net/projects/javamony/ Given Python's beauty, I know that someday I will have to finish Pysimony. A student's first attempt at a phylogenetic inference program, written in the simplistic yet elegant Python. Pysimony reads a FASTA file (only ATGC accepted) specified as its only argument. Basic testing has shown that it is slow, inaccurate and most definitely inefficient. An...
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  • 19
    LightLife

    LightLife

    A lightweight Implementation of Conway's Game of Life

    LightLife offers a clearly laid out user interface to test a universe without any effort. It support various modifications, can save and open Windows-Bitmaps and has got a build-in database of the most common objects.
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  • 20
    EToS (Efficient Technology of Spike sorting; Extracellular recording To Spike trains) is an open-source system for spike sorting. EToS contains the programs of spike detection, feature extraction and clustering.
    Downloads: 0 This Week
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  • 21
    A very simple command line tool to convert OSM files to Shapefiles. Written in Java. Think of it as a self-study project.
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  • 22
    System Stability Tester
    System Stability Tester is a multi platform open source clone of SuperPI and comes with a GUI and a CLI. It can be used for CPU and RAM burning, stressing and benchmarking.
    Downloads: 27 This Week
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  • 23
    Climate Modeling

    Climate Modeling

    Benefit Your Learning of Climate Modeling

    The goal of this project is to provide a couple of Fortran code to those students who selected the course of "Climate Modeling" in the department of atmospheric and oceanic sciences at Peking University. 这个项目的目标是给选择“气候模拟”课程(北京大学大气与海洋科学系)的同学提供与课程学习有关的源代码程序。 We are subject to GNU/GPL license and happy to open the code to the public. 我们遵守GNU/GPL协议,并乐于开放代码给所有需要的人。
    Downloads: 0 This Week
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  • 24
    The program evaluates ordinal expressions and relations. displaying the normal form output in plain text and/or TeX format. It supports notations for ordinals through and somewhat beyond those definable by the Veblen function.
    Downloads: 0 This Week
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  • 25
    MicroStitcher

    MicroStitcher

    Tiny tool capable of stitching hundreds images into one single image

    This is very small tool, which is capable of stitching hundreds of images into one single image. The main purpose of the tool is to stitch small pieces of map taken by screenshots for example from OpenStreetMap. The tool automatically calculates relative positions of every single patch. A single patch has to have considerable amount of margins that are required to find control points that will match a pair of patches.
    Downloads: 0 This Week
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